Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0891
(814 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 208 4e-54
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 193 1e-49
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 193 1e-49
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 146 1e-35
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 146 1e-35
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 146 1e-35
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 142 2e-34
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 137 7e-33
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 136 2e-32
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 134 5e-32
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 105 3e-23
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 102 3e-22
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 98 5e-21
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 96 2e-20
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 95 5e-20
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 92 3e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 90 1e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 88 7e-18
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 88 7e-18
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 82 5e-16
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 76 2e-14
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 76 3e-14
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 73 2e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 71 9e-13
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 69 4e-12
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 67 1e-11
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 65 6e-11
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 63 2e-10
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 63 2e-10
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 61 7e-10
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 61 7e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 60 1e-09
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 60 1e-09
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 60 2e-09
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 60 2e-09
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 58 5e-09
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 58 5e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 5e-09
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 58 7e-09
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 57 2e-08
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 57 2e-08
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 56 2e-08
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 56 3e-08
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 56 4e-08
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 56 4e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 55 6e-08
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 54 1e-07
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 54 1e-07
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 54 1e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 53 3e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 52 3e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 51 8e-07
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 51 1e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 1e-06
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 48 7e-06
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 46 2e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 5e-04
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 41 9e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 41 0.001
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 39 0.005
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 35 0.074
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 35 0.074
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 30 1.6
At5g43990.2 68418.m05382 SET domain-containing protein identical... 29 3.7
At5g43990.1 68418.m05383 SET domain-containing protein identical... 29 3.7
At5g40390.1 68418.m04899 raffinose synthase family protein simil... 29 3.7
At4g01970.1 68417.m00262 galactinol-raffinose galactosyltransfer... 29 3.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 3.7
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 29 4.9
At3g14810.1 68416.m01871 mechanosensitive ion channel domain-con... 29 4.9
At3g59750.1 68416.m06666 receptor lectin kinase, putative simila... 28 6.4
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 6.4
At2g25460.1 68415.m03049 expressed protein 28 6.4
At5g48950.1 68418.m06056 thioesterase family protein contains Pf... 28 8.5
At4g31640.1 68417.m04494 transcriptional factor B3 family protei... 28 8.5
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 208 bits (507), Expect = 4e-54
Identities = 98/178 (55%), Positives = 125/178 (70%), Gaps = 2/178 (1%)
Frame = +1
Query: 238 SPR-LGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
SPR L L PF KNFY P V + EVEEYR E+TV G ++ P++ F + F
Sbjct: 47 SPRKLDLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGF 106
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPP 591
PDYV + VK G+ EPTPIQ+QGWP+AM G+ + +TGSGKTL+Y+LPAIVH+N QP
Sbjct: 107 PDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPM 166
Query: 592 IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
+ GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GV+
Sbjct: 167 LAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVE 224
Score = 31.5 bits (68), Expect = 0.69
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L +G +IVIATPGRLID +E
Sbjct: 219 LQKGVEIVIATPGRLIDMME 238
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 193 bits (471), Expect = 1e-49
Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIR 597
+ + + +G+ EPTPIQAQGWP+A+ G+ + +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 598 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGV+
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G +IVIATPGRLID LE
Sbjct: 285 LRRGVEIVIATPGRLIDMLE 304
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 193 bits (471), Expect = 1e-49
Identities = 89/176 (50%), Positives = 124/176 (70%), Gaps = 1/176 (0%)
Frame = +1
Query: 241 PRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
P+ F +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 421 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIR 597
+ + + +G+ EPTPIQAQGWP+A+ G+ + +TGSGKTLAY+LPA+VH++ QP +
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLG 234
Query: 598 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
+ DGPI L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGV+
Sbjct: 235 QDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVE 290
Score = 31.9 bits (69), Expect = 0.52
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G +IVIATPGRLID LE
Sbjct: 285 LRRGVEIVIATPGRLIDMLE 304
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 146 bits (355), Expect = 1e-35
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
QAQ WPIAM G+ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 649 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 759
QIQ+ A FG +S + TC++GGAPK Q RDLERG
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G+ IV+ATPGRL D LE
Sbjct: 277 LERGADIVVATPGRLNDILE 296
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 146 bits (355), Expect = 1e-35
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
QAQ WPIAM G+ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 649 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 759
QIQ+ A FG +S + TC++GGAPK Q RDLERG
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G+ IV+ATPGRL D LE
Sbjct: 277 LERGADIVVATPGRLNDILE 296
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 146 bits (355), Expect = 1e-35
Identities = 76/157 (48%), Positives = 97/157 (61%), Gaps = 1/157 (0%)
Frame = +1
Query: 292 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 471
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 472 QAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELA 648
QAQ WPIAM G+ +A +TGSGKTL Y++P +H+ R GP LVL+PTRELA
Sbjct: 185 QAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSR-MGPTILVLSPTRELA 243
Query: 649 QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 759
QIQ+ A FG +S + TC++GGAPK Q RDLERG
Sbjct: 244 TQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERG 280
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G+ IV+ATPGRL D LE
Sbjct: 277 LERGADIVVATPGRLNDILE 296
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 142 bits (345), Expect = 2e-34
Identities = 67/169 (39%), Positives = 102/169 (60%), Gaps = 1/169 (0%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 183 IDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSA 242
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
+K Y++PT IQ Q PI +SG+ + +TGSGKT A++LP IVHI +QP ++R +GP
Sbjct: 243 IKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGP 302
Query: 613 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 759
I ++ APTRELA QI A F +R + V+GG K EQ ++L+ G
Sbjct: 303 IGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAG 351
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G +IV+ATPGRLID L+
Sbjct: 348 LKAGCEIVVATPGRLIDMLK 367
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 137 bits (332), Expect = 7e-33
Identities = 67/171 (39%), Positives = 99/171 (57%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
+K + Y++P PIQ Q PI MSG+ + +TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 603
Query: 613 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
I LV+APTREL QQI F +R V+GG+ +Q +L+RG +
Sbjct: 604 IGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTE 654
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFL 803
L G++IV+ TPGR+ID L
Sbjct: 649 LKRGTEIVVCTPGRMIDIL 667
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 136 bits (328), Expect = 2e-32
Identities = 74/167 (44%), Positives = 101/167 (60%), Gaps = 5/167 (2%)
Frame = +1
Query: 274 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 441
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 442 TMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIA 618
+ G+ PTPIQAQ WPIA+ + +A +TGSGKTL Y++PA + + + R +GP
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTV 510
Query: 619 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG 759
L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERG 557
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L G+ IV+ATPGRL D LE
Sbjct: 554 LERGADIVVATPGRLNDILE 573
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 134 bits (325), Expect = 5e-32
Identities = 67/171 (39%), Positives = 98/171 (57%), Gaps = 1/171 (0%)
Frame = +1
Query: 256 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 435
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
+K + Y++P PIQAQ PI MSG+ + +TGSGKTL ++LP + HI +QPP+ GDGP
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGP 470
Query: 613 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
I LV+APTREL QQI F + V+GG+ +Q +L+RG +
Sbjct: 471 IGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFL 803
L G++IV+ TPGR+ID L
Sbjct: 516 LKRGTEIVVCTPGRMIDIL 534
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 105 bits (253), Expect = 3e-23
Identities = 54/110 (49%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Frame = +1
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGP 612
V + G+ P+PIQAQ WPIAM + +A +TGSGKTL Y++P +H+ R GP
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GP 302
Query: 613 IALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 762
LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV
Sbjct: 303 TILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGV 352
Score = 31.1 bits (67), Expect = 0.91
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 331 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 420
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 102 bits (244), Expect = 3e-22
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 11/182 (6%)
Frame = +1
Query: 250 GFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 429
G +P + ++ P V K S +++ R +TV+G ++ PI+ F + FP +
Sbjct: 51 GITYTEPLS-TWWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLL 109
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYQTGSGKTLAYILPAIVHINNQP---PI 594
+ +K G PTPIQ QG P+ +SG+ I +A+ TGSGKTL ++LP I+ + PI
Sbjct: 110 RMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAF-TGSGKTLVFVLPMIILALQEEIMMPI 168
Query: 595 RRGDGPIALVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLER 756
G+GPIALV+ P+RELA+Q ++Q A Y +R+ GG R Q +++
Sbjct: 169 AAGEGPIALVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKK 228
Query: 757 GV 762
GV
Sbjct: 229 GV 230
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 98.3 bits (234), Expect = 5e-21
Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 4/145 (2%)
Frame = +1
Query: 337 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L 516
+R + ++ G + P++ +EE+ + + V+ GYK+P+PIQ P+ + + +
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 517 AY-QTGSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGH 684
+TGSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAH 414
Query: 685 TSYVRNTCVFGGAPKREQARDLERG 759
R T + GG EQ + +G
Sbjct: 415 YLGFRVTSIVGGQSIEEQGLKITQG 439
Score = 32.3 bits (70), Expect = 0.39
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 753 EGSKIVIATPGRLIDFLEK 809
+G +IVIATPGRLID LE+
Sbjct: 438 QGCEIVIATPGRLIDCLER 456
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 96.3 bits (229), Expect = 2e-20
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 7/174 (4%)
Frame = +1
Query: 262 LQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGV 438
+ PF + +P P ++ + + + + SG V P+ F E + + + +
Sbjct: 115 VNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEIDLGEALNLNI 174
Query: 439 KTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG-- 609
+ Y +PTP+Q PI + G+ +A QTGSGKT A+ P I I ++R G
Sbjct: 175 RRCKYVKPTPVQRHAIPILLEGRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSR 234
Query: 610 ---PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 762
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV
Sbjct: 235 TVYPLAVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGV 288
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 95.1 bits (226), Expect = 5e-20
Identities = 59/170 (34%), Positives = 93/170 (54%), Gaps = 11/170 (6%)
Frame = +1
Query: 286 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 465
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 466 PIQAQGWPIAMSGK--I*LAYQTGSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLA 630
PIQ QG P+ ++G+ I +A+ TGSGKTL ++LP I+ + PI G+GPI L++
Sbjct: 171 PIQVQGLPVILAGRDMIGIAF-TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVC 229
Query: 631 PTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGV 762
P+RELA+Q ++Q A Y +R+ GG R Q ++RGV
Sbjct: 230 PSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGV 279
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 92.3 bits (219), Expect = 3e-19
Identities = 60/172 (34%), Positives = 86/172 (50%), Gaps = 7/172 (4%)
Frame = +1
Query: 268 PF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
PF N DP + + E Y + + SG V P+ F E + + + ++
Sbjct: 105 PFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQR 163
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDG---- 609
Y +PTP+Q PI +G+ +A QTGSGKT A+ P I I I R G
Sbjct: 164 CKYVKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGV 223
Query: 610 -PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 762
P+A++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV
Sbjct: 224 YPLAVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGV 275
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLEKG 812
L G I++ATPGRL D LE+G
Sbjct: 271 LERGVDILVATPGRLNDLLERG 292
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 90.2 bits (214), Expect = 1e-18
Identities = 57/153 (37%), Positives = 84/153 (54%), Gaps = 7/153 (4%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 498
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
Query: 499 SGKI*LAY-QTGSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQ 663
G+ + +TGSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI
Sbjct: 150 DGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISD 209
Query: 664 VAADFGHTSYVRNTCVFGGAPKREQARDLERGV 762
V + G +++ CV+GG+ K Q + GV
Sbjct: 210 VLREAGEPCGLKSICVYGGSSKGPQISAIRSGV 242
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 7e-18
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTG 531
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 532 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 696
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 697 RNTCVFGGAPKREQARDLERG 759
+ +GG P +Q R+LERG
Sbjct: 259 KVVVAYGGTPIHQQLRELERG 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLEK 809
L G I++ATPGRL D LE+
Sbjct: 276 LERGCDILVATPGRLNDLLER 296
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 7e-18
Identities = 51/141 (36%), Positives = 74/141 (52%), Gaps = 6/141 (4%)
Frame = +1
Query: 355 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTG 531
V SG +V P+ F + + D + ++ Y PTP+Q PI ++ + +A QTG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 532 SGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYV 696
SGKT A+ P I I + R G P A++L+PTRELA QI A F + + V
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 697 RNTCVFGGAPKREQARDLERG 759
+ +GG P +Q R+LERG
Sbjct: 259 KVVVAYGGTPIHQQLRELERG 279
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLEK 809
L G I++ATPGRL D LE+
Sbjct: 276 LERGCDILVATPGRLNDLLER 296
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 81.8 bits (193), Expect = 5e-16
Identities = 52/156 (33%), Positives = 80/156 (51%), Gaps = 6/156 (3%)
Frame = +1
Query: 316 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 489
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 490 IAMSGKI*LAY-QTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQI 657
A++GK LA TGSGKT ++++P I +++ P + P+A+VLAPTREL Q+
Sbjct: 143 AALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQV 202
Query: 658 QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
+ A G + V GG P Q +++GV+
Sbjct: 203 EDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVE 238
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 76.2 bits (179), Expect = 2e-14
Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 1/122 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
FE N V +K GYK PTPIQ + P+ +SG +A +TGSGKT A+++P +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
+ P +G G AL+L+PTR+LA+Q + + G + +R + + GG +Q +L
Sbjct: 90 LKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELT 146
Query: 754 RG 759
+G
Sbjct: 147 KG 148
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 75.8 bits (178), Expect = 3e-14
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 1/128 (0%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGS 534
TV GV H F E N + + +T+GYK+PTPIQA P+A++G+ + + TGS
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGS 215
Query: 535 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVF 714
GKT A+ LP + + +P +R L+L PTRELA QI + + + ++ +
Sbjct: 216 GKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGLIV 273
Query: 715 GGAPKREQ 738
GG REQ
Sbjct: 274 GGLSVREQ 281
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/109 (35%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Frame = +1
Query: 445 MGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHI-NNQPPIRRGDGPIA 618
MG++ PT +QAQ P+ +SG+ + + TG+GKT+AY+ P I H+ + P + R G A
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFA 107
Query: 619 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGV 762
LV+ PTREL Q+ + H ++ V GG K ++ L +G+
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGI 156
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L +G I+IATPGRL+D L+
Sbjct: 152 LRKGISILIATPGRLLDHLK 171
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 70.9 bits (166), Expect = 9e-13
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPA 564
++ F+E + V ++ + + PT IQ G P M K + L TGSGKTLAY+LP
Sbjct: 111 VENFQELGLSEEVMGALQELNIEVPTEIQCIGIPAVMERKSVVLGSHTGSGKTLAYLLP- 169
Query: 565 IVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 729
IV + + G P +VL PTREL++Q+ +VA H + R+ V GG+
Sbjct: 170 IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRI 229
Query: 730 REQARDLERGV 762
R Q L +
Sbjct: 230 RPQEDSLNNAI 240
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 68.9 bits (161), Expect = 4e-12
Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Frame = +1
Query: 340 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI +SG+
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
Query: 508 I*LA-YQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 654
A TGSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 180 ECFACAPTGSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 67.3 bits (157), Expect = 1e-11
Identities = 54/169 (31%), Positives = 81/169 (47%), Gaps = 3/169 (1%)
Frame = +1
Query: 265 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 444
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 445 MGYKEPTPIQAQGWPIAMSGKI*L-AYQTGSGKTLAYILPAIVHINNQPPIRRGDGPIAL 621
MG+ T IQA+ P M G+ L A +TGSGKTLA+++PA V + + +G L
Sbjct: 172 MGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPA-VELLYRVKFTPRNGTGVL 230
Query: 622 VLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGV 762
V+ PTRELA Q VA + H+ V V GG ++ +A L +GV
Sbjct: 231 VICPTRELAIQSYGVAKELLKYHSQTVGK--VIGGEKRKTEAEILAKGV 277
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
L +G +++ATPGRL+D LE
Sbjct: 273 LAKGVNLLVATPGRLLDHLE 292
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 64.9 bits (151), Expect = 6e-11
Identities = 41/113 (36%), Positives = 61/113 (53%), Gaps = 2/113 (1%)
Frame = +1
Query: 325 EVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 504
EVEE RN+ E E P + FEE + + + G ++PT IQ P + G
Sbjct: 25 EVEEQRNDREQEEEQKEEEAP-KSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEG 83
Query: 505 KI*LAY-QTGSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 657
K +A +TGSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 63.3 bits (147), Expect = 2e-10
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Frame = +1
Query: 361 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSG 537
V VEV NP + +++ +K G + PIQA + + + G + +TG G
Sbjct: 87 VEDVEVDNP-NAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQG 145
Query: 538 KTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRN 702
KTLA++LP + + N P + G P LVL PTRELA+Q+ +G + + +
Sbjct: 146 KTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSS 205
Query: 703 TCVFGGAPKREQARDLERGV 762
C++GG Q L+RGV
Sbjct: 206 CCLYGGDSYPVQEGKLKRGV 225
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 62.9 bits (146), Expect = 2e-10
Identities = 42/116 (36%), Positives = 67/116 (57%), Gaps = 3/116 (2%)
Frame = +1
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHI-NNQPPIR 597
+ + + + G ++ PIQ AM G+ + +TG+GKTLA+ +P I I
Sbjct: 115 IVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHG 174
Query: 598 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGV 762
RG P+ LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV
Sbjct: 175 RGRNPLCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGV 227
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 61.3 bits (142), Expect = 7e-10
Identities = 42/116 (36%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = +1
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINN-QPPIR 597
+ + +K G ++ PIQ AM G+ + +TG+GKTLA+ +P I I
Sbjct: 127 IVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHG 186
Query: 598 RGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGV 762
RG P LVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+
Sbjct: 187 RGKNPQCLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGI 239
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 61.3 bits (142), Expect = 7e-10
Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 1/119 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
FE ++ + K +G ++PTP+Q P ++G+ L QTGSGKT A+ LP I+H
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALP-ILH 118
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 750
+ P G ALV+ PTRELA Q+ + G +R + + GG Q L
Sbjct: 119 RLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSL 173
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 60.5 bits (140), Expect = 1e-09
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK--I*LAYQTGSGKTL 546
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK I LA QTGSGKT
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLA-QTGSGKTG 61
Query: 547 AYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFGHTSYVRNT 705
A+ +P + + +++P R P A VL+PTRELA QI + G +R
Sbjct: 62 AFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCA 121
Query: 706 CVFGGAPKREQ 738
+ GG + +Q
Sbjct: 122 VLVGGIDRMQQ 132
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 60.5 bits (140), Expect = 1e-09
Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Frame = +1
Query: 385 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKT--LAYI 555
PI+ F++ D V +GV GYK+P+ IQ + + G+ +A Q+G+GKT +A
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 556 LPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKR 732
+ IV+I+++ LVL+P+RELA Q ++ G HT+ + C+ GG
Sbjct: 80 VCQIVNISSRKVQ-------VLVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIG 131
Query: 733 EQARDLERGV 762
E + LERGV
Sbjct: 132 EDIKKLERGV 141
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 60.1 bits (139), Expect = 2e-09
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 2/146 (1%)
Frame = +1
Query: 328 VEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK 507
+E+ + + + G + + F+ + + +K MG++ T IQA + GK
Sbjct: 69 MEDGEDEKNIVIVGKGIMTNVT-FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGK 127
Query: 508 I*L-AYQTGSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
L A +TGSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA +
Sbjct: 128 DVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELL 185
Query: 682 HTSYVRNTCVFGGAPKREQARDLERG 759
+ V GG +R +A+ + G
Sbjct: 186 KHHSQTVSMVIGGNNRRSEAQRIASG 211
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 747 LGEGSKIVIATPGRLIDFLE 806
+ GS +VIATPGRL+D L+
Sbjct: 208 IASGSNLVIATPGRLLDHLQ 227
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 59.7 bits (138), Expect = 2e-09
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
F E + + + +K + P IQA + + GK +A Q+GSGKTLAY++P I
Sbjct: 376 FAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVIQR 435
Query: 574 INN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQ 738
+ Q + G P +VL PT ELA Q+ + R+ V GG +R Q
Sbjct: 436 LREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQ 495
Query: 739 ARDLERGV 762
+LE+GV
Sbjct: 496 LENLEQGV 503
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + G+ G++ P+PIQ + PIA++G+ LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 754 RGV 762
+ V
Sbjct: 248 QPV 250
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/123 (29%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + G+ G++ P+PIQ + PIA++G+ LA + G+GKT A+ +P +
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
I+ + + A+++ PTRELA Q QV + G ++ GG ++ L
Sbjct: 193 IDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLY 247
Query: 754 RGV 762
+ V
Sbjct: 248 QPV 250
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 58.4 bits (135), Expect = 5e-09
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 4/100 (4%)
Frame = +1
Query: 478 QGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTREL 645
Q P A++GK LA TGSGKT ++++P I +++ P + P+A+VLAPTREL
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTREL 61
Query: 646 AQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVK 765
Q++ A G + V GG P Q +++GV+
Sbjct: 62 CVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVE 101
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 58.0 bits (134), Expect = 7e-09
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Frame = +1
Query: 409 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQ 585
+ P +++ ++ G PIQ A+ G+ +A +TG+GKTLA+ +P I + +
Sbjct: 108 SLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
Query: 586 P----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDL 750
RR G P LVLAPTRELA+Q+++ + Y+ CV+GG Q L
Sbjct: 168 AGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSAL 225
Query: 751 ERGV 762
RGV
Sbjct: 226 TRGV 229
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + +G+ G+++P+PIQ + PIA++G LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 754 RGV 762
+ V
Sbjct: 241 QPV 243
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 56.8 bits (131), Expect = 2e-08
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + +G+ G+++P+PIQ + PIA++G LA + G+GKT A+ +P +
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
I+ + + A++L PTRELA Q QV + ++ GG R+ L
Sbjct: 186 IDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLH 240
Query: 754 RGV 762
+ V
Sbjct: 241 QPV 243
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 56.4 bits (130), Expect = 2e-08
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 606
+ +K G++ T +Q PI + GK LA +TG+GKT+A++LPAI + PP R
Sbjct: 395 KAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDS 454
Query: 607 GP---IALVLAPTRELAQQ 654
I LV+ PTRELA Q
Sbjct: 455 RQPPIIVLVVCPTRELASQ 473
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 56.0 bits (129), Expect = 3e-08
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LA-YQTGSGKTLAYILPAIVH 573
FE+ + +G+ G+++P+PIQ + PIA++G LA + G+GKT A+ +P +
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
I+ + + + A++L PTRELA Q QV + + GG R+ L
Sbjct: 216 IDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLY 270
Query: 754 RGV 762
+ V
Sbjct: 271 QPV 273
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 55.6 bits (128), Expect = 4e-08
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Frame = +1
Query: 430 QGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPPIRRGD 606
+ +K GY+ T +Q PI + GK LA +TG+GKT+A++LP+I + PP +
Sbjct: 67 KAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPTSPDN 126
Query: 607 --GPI-ALVLAPTRELAQQ 654
PI ALV+ PTRELA Q
Sbjct: 127 KRPPILALVICPTRELANQ 145
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 55.6 bits (128), Expect = 4e-08
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 4/90 (4%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
F++ +G++ G+K T +Q P+ + GK LA +TG+GKT+A++LP+I
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 574 INNQPPIRRGDGP---IALVLAPTRELAQQ 654
+ PP R + I LV+ PTRELA Q
Sbjct: 142 VIKAPPASRDNRHPPIIVLVVCPTRELACQ 171
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 54.8 bits (126), Expect = 6e-08
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 5/107 (4%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 615
G++ TP+QA+ P S K + + TGSGKTLA++LP I I N+ PP + +
Sbjct: 35 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 92
Query: 616 ALVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLE 753
++++PTREL+ QI +VA F T V + + GG LE
Sbjct: 93 GVIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLE 139
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Frame = +1
Query: 373 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKI*LAYQTGSGKTLA 549
EVH + F+ + + +G+ G+++P+ IQ +G P + Q+G+GKT
Sbjct: 36 EVH---ESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTAT 92
Query: 550 YILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPK 729
+ + ++ + ALVLAPTRELAQQI++V G V+ GG
Sbjct: 93 FCSGVLQQLDYALLQCQ-----ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSV 147
Query: 730 REQARDLERGV 762
RE R L+ GV
Sbjct: 148 REDQRILQAGV 158
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 702 HVCVWWCS*KRASPGLGEGSKIVIATPGRLIDFLEK 809
H CV S + L G +V+ TPGR+ D L +
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRR 174
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 53.6 bits (123), Expect = 1e-07
Identities = 30/90 (33%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Frame = +1
Query: 388 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*L-AYQTGSGKTLAYILPA 564
++ F + D ++G+K Y + T +Q+ P A+ G+ L A +TGSGKTLA+++P
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 565 IVHINNQPPIRRGDGPIALVLAPTRELAQQ 654
+ ++ + DG ++++PTRELA Q
Sbjct: 130 LEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 53.6 bits (123), Expect = 1e-07
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Frame = +1
Query: 358 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQG-WPIAMSGKI*LAYQTGS 534
T G+E PI F + + V +GV G+++P+ IQ + PI + Q+G+
Sbjct: 27 TTDGIE---PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGT 83
Query: 535 GKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG-HTSYVRNTCV 711
GKT L ++ + AL+L+PTRELA Q ++ G H + + C+
Sbjct: 84 GKTSMIALSVCQVVDTSSREVQ-----ALILSPTRELATQTEKTIQAIGLHANIQAHACI 138
Query: 712 FGGAPKREQARDLERGV 762
GG E R LE GV
Sbjct: 139 -GGNSVGEDIRKLEHGV 154
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 52.8 bits (121), Expect = 3e-07
Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKI*LAYQTGSGKTLAYILPAIVHINNQPP 591
PD ++ G+ G+++P+ IQ +G P + Q+G+GKT + + ++
Sbjct: 50 PDLLR-GIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTGKTATFCSGVLQQLDISLV 108
Query: 592 IRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGV 762
+ ALVLAPTRELAQQI++V G V+ GG RE R L+ GV
Sbjct: 109 QCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGV 160
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.4 bits (120), Expect = 3e-07
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKI*LAYQTGSGKTLAYILPAIVH 573
F+ + + +G+ G+++P+ IQ +G P + Q+G+GKT + +
Sbjct: 41 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGVLQQ 100
Query: 574 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLE 753
++ + ALVLAPTRELAQQI++V G V+ GG RE R L+
Sbjct: 101 LDFSLIQCQ-----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQ 155
Query: 754 RGV 762
GV
Sbjct: 156 AGV 158
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 702 HVCVWWCS*KRASPGLGEGSKIVIATPGRLIDFLEK 809
H CV S + L G +V+ TPGR+ D L++
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKR 174
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 51.2 bits (117), Expect = 8e-07
Identities = 32/78 (41%), Positives = 49/78 (62%), Gaps = 4/78 (5%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHI---NNQPPIRRGDGPI 615
G++ TP+QA+ P S K + + TGSGKTLA++LP I I N+ PP + +
Sbjct: 36 GFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP--KPHQVM 93
Query: 616 ALVLAPTRELAQQIQQVA 669
++++PTREL+ QI +VA
Sbjct: 94 GVIISPTRELSAQIHKVA 111
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 50.8 bits (116), Expect = 1e-06
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Frame = +1
Query: 415 PDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHINNQPP 591
P+++ ++ +G+ PT IQ + P +G+ + + QTGSGKTL Y+L IN Q
Sbjct: 84 PEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQ-- 141
Query: 592 IRRGDGPIALVLAPTRELAQQIQQVA 669
A+++ PTREL Q+ +VA
Sbjct: 142 ---RSSVQAVIVVPTRELGMQVTKVA 164
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.4 bits (115), Expect = 1e-06
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVH 573
FEE PD + ++ G+ PT +Q+ P + G + TGSGKTLAY+LP +
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSE 171
Query: 574 INNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAP 726
I R A+++AP+REL QI ++V G + GGA
Sbjct: 172 IGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGAN 231
Query: 727 KREQARDLER 756
+ Q L++
Sbjct: 232 RMRQEEALKK 241
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 48.0 bits (109), Expect = 7e-06
Identities = 33/102 (32%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Frame = +1
Query: 463 TPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLA 630
TP+QA P+ S K + + TGSGKTLA+++P + + PP + + ++++
Sbjct: 40 TPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIIS 97
Query: 631 PTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLE 753
PTREL+ QI VA F T + V + + GG + + +E
Sbjct: 98 PTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIE 139
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 46.4 bits (105), Expect = 2e-05
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 4/117 (3%)
Frame = +1
Query: 343 NNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT-MGYKEPTPIQAQGWPIAMSG--KI* 513
+N + SG + FE+ N + +G+ M +++P+ IQA P+ M+ K
Sbjct: 75 SNIKAVTSGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHL 134
Query: 514 LAY-QTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 681
+A GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 135 IAQAHNGSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 42.3 bits (95), Expect = 4e-04
Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Frame = +1
Query: 424 VQQGVKTMGYKEPTPIQAQGW-----PIAMSGKI*LAYQTGSGKTLAYILPAIVHINNQP 588
+++ ++ MG P+Q W P I + TGSGKTL+Y LP IV +
Sbjct: 32 LKKALENMGISSLFPVQVAVWHETIGPGGFERDICVNSPTGSGKTLSYALP-IVQLLASR 90
Query: 589 PIRRGDGPIALVLAPTRELAQQIQQV 666
P+R ALV+ PTR+LA Q++ V
Sbjct: 91 PVR---CLRALVVLPTRDLALQVKDV 113
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 5e-04
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Frame = +1
Query: 397 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVH 573
F+E+ + + G + T +Q + GK L +TG+GK++A++LPAI
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 574 I----NNQPPIRRGDGPIALVLAPTRELAQQI 657
+ N+ + + AL+L PTRELA QI
Sbjct: 390 VLKAMNSGKGVNKVAPIFALILCPTRELASQI 421
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 41.1 bits (92), Expect = 9e-04
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 17/127 (13%)
Frame = +1
Query: 424 VQQGVKTMGYKEPTPIQAQGWPIAM-SGKI*L-AYQTGSGKTLAYILPAIVHI------- 576
+ + + + +KEPT IQ + +A GK + A +TGSGKTLA+ LP + +
Sbjct: 201 LMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQRLLDEREKV 260
Query: 577 -------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKR 732
+ DG + AL++ PTRELA Q+ + + V+ + GG
Sbjct: 261 GKLYALKGEEAQKYAADGYLRALIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSE 320
Query: 733 EQARDLE 753
+Q R L+
Sbjct: 321 KQERRLK 327
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 40.7 bits (91), Expect = 0.001
Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Frame = +1
Query: 274 NKNFYDPH---PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPI---QYFEEANFPDYVQQG 435
N+N D P + R ++ + ++ V E H+ I + F+E+ +
Sbjct: 330 NRNVTDEELYPPLDINRVREDLSKKQSVDNVMEEKQEPHDSIYSAKRFDESCISPLTLKA 389
Query: 436 VKTMGYKEPTPIQAQGWPIAMSGKI*LAY-QTGSGKTLAYILPAIVHI----NNQPPIRR 600
+ G + T +Q + GK L +TG+GK++A++LPAI + N+ + +
Sbjct: 390 LSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIETVLKAMNSGKGVHK 449
Query: 601 GDGPIALVLAPTRELAQQI 657
L+L PTRELA QI
Sbjct: 450 VAPIFVLILCPTRELASQI 468
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 38.7 bits (86), Expect = 0.005
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Frame = +1
Query: 418 DYVQQGVKTMGYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHINN---- 582
D V ++ G+ P+ QA P +SGK + +A +TGSGKT Y+ P I + N
Sbjct: 89 DNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTNTALD 148
Query: 583 QPPIRRGDGP-----IALVLAPTRELAQQI 657
R + P I+L+L P L +Q+
Sbjct: 149 SEVTNREERPFPLKNISLILCPNVMLCEQV 178
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 34.7 bits (76), Expect = 0.074
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 621
G++ P+ +Q + P A+ G + ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 622 VLAPTRELAQQI 657
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 34.7 bits (76), Expect = 0.074
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +1
Query: 448 GYKEPTPIQAQGWPIAMSGK-I*LAYQTGSGKTLAYILPAIVHINNQPPIRRGDGPI-AL 621
G++ P+ +Q + P A+ G + ++G GKT ++L + I P G + AL
Sbjct: 65 GFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP------GQVSAL 118
Query: 622 VLAPTRELAQQI 657
VL TRELA QI
Sbjct: 119 VLCHTRELAYQI 130
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +3
Query: 516 GVPNGFRQNVGLHLASHCAHKQPTAYSER*WSDCFGLGAYQRVSTTNSAS 665
G+ +GF++ G+HL+ H H +P A E +++ F + + + T + S
Sbjct: 64 GIASGFKRVAGIHLSIH--HLRPAALGEIVFAESFPVSVGKNIQTEDLKS 111
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 235 ASPRLGFVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 414
ASP LG +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 415 PDYVQQGVKTM 447
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g40390.1 68418.m04899 raffinose synthase family protein similar
to galactinol-raffinose galactosyltransferase [Vigna
angularis] GI:6634701, seed imbibition protein
GB:AAA32975 GI:167100 from [Hordeum vulgare]; contains
Pfam profile PF05691: Raffinose synthase or seed
imbibition protein Sip1
Length = 783
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 435 CKDNGLQRTDAHSSSRLADSYVWKDLVGVPNGFRQNVGLHLASHCAH 575
C D T+A S R+ D + D G PNG G H+ HCA+
Sbjct: 459 CNDFMFLGTEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMV-HCAY 504
>At4g01970.1 68417.m00262 galactinol-raffinose
galactosyltransferase, putative similar to
galactinol-raffinose galactosyltransferase GI:6634701
from [Vigna angularis]
Length = 807
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 432 RCKDNGLQRTDAHSSSRLADSYVWKDLVGVPNGFRQNVGLHLASHCAH 575
+C + T S R+ D + W+D G P G G+H+ HC++
Sbjct: 473 QCNEFFFLATKQISIGRVGDDFWWQDPYGDPQGVYWLQGVHMI-HCSY 519
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +3
Query: 180 LEDLEDLVGKKNSLEVRTCVAQIGICFAPTF 272
+ D++ +GK V C A++G+CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 523 QTGSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 657
++G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 8 KSGMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At3g14810.1 68416.m01871 mechanosensitive ion channel
domain-containing protein / MS ion channel
domain-containing protein contains Pfam profile PF00924:
Mechanosensitive ion channel
Length = 853
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = -1
Query: 247 IWATHVLTSREFFFPTKSSRSSKSIATVAKSRRIIAEFVASSKF-GTTVSTAIIPVTRH- 74
+W VL + F F K R ++S A +R ++ VA + T+ ++ + H
Sbjct: 355 LWLGLVLLAWHFLFDKKVERETRSTALRYVTRVLVCLLVALIIWLVKTILVKVLASSFHM 414
Query: 73 -DYFSDLVEDVYLNYGFFLTQGPP 5
YF + E ++ Y GPP
Sbjct: 415 STYFDRIQESLFTQYVIETLSGPP 438
>At3g59750.1 68416.m06666 receptor lectin kinase, putative similar
to receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733
Length = 626
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -1
Query: 208 FPTKSSRSSKSIATVAKSRRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYG 29
+P KSS +K I V + + A FVAS + TRH +++E+ + YG
Sbjct: 235 YPKKSSDRTKKILAVCLTLAVFAVFVAS-------GICFVFYTRHKKVKEVLEEWEIQYG 287
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 656 ICCANSLVGAKTKAIGPSPLRI 591
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 28.3 bits (60), Expect = 6.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -3
Query: 155 EKNYRRICCLLQIWNHRFHGYY 90
E+ + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
>At5g48950.1 68418.m06056 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 157
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 516 GVPNGFRQNVGLHLASHCAHKQPTAYSER*WSDCF 620
G+ +GF++ G+HL+ H H +P A E +++ F
Sbjct: 64 GIASGFKRVAGIHLSIH--HLRPAALGEIVFAESF 96
>At4g31640.1 68417.m04494 transcriptional factor B3 family protein
low similarity to reproductive meristem gene 1 [Brassica
oleracea var. botrytis] GI:3170424; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 352
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 474 SSRLADSYVWKDLVGVPNGFRQNVGLHLASH 566
S + S + +DLVG+P F + GL++ H
Sbjct: 153 SQSVTASNLTRDLVGIPRDFAKRYGLNIGRH 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,749,046
Number of Sequences: 28952
Number of extensions: 389308
Number of successful extensions: 1370
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1853336000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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