Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0890
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 2e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 106 4e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 6e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 99 8e-22
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 64 2e-11
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 64 3e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 60 3e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 40 4e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.10
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.41
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.54
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.3
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 27 2.2
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.8
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 3.8
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 5.1
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 5.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 6.7
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 8.9
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 25 8.9
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (422), Expect = 2e-44
Identities = 78/84 (92%), Positives = 80/84 (95%)
Frame = +1
Query: 256 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 435
SKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKM
Sbjct: 60 SKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKM 119
Query: 436 TQIMFETFNTPAMYVAIQAVLSLY 507
TQI+FETFN PA YVAIQAVLSLY
Sbjct: 120 TQIIFETFNAPAFYVAIQAVLSLY 143
Score = 166 bits (404), Expect = 3e-42
Identities = 77/83 (92%), Positives = 82/83 (98%)
Frame = +3
Query: 510 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA 689
SGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTA
Sbjct: 145 SGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTA 204
Query: 690 EREIVRDIKEKLCYVALDFEQEM 758
EREIVRDIKEKLCYVALDFEQE+
Sbjct: 205 EREIVRDIKEKLCYVALDFEQEL 227
Score = 122 bits (293), Expect = 7e-29
Identities = 53/60 (88%), Positives = 59/60 (98%)
Frame = +2
Query: 83 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEARAK 262
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 106 bits (254), Expect = 4e-24
Identities = 46/83 (55%), Positives = 65/83 (78%)
Frame = +3
Query: 510 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTA 689
S RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL L + G+ ++A
Sbjct: 150 SARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSA 209
Query: 690 EREIVRDIKEKLCYVALDFEQEM 758
E+EIVR+IKEK CYVA DF E+
Sbjct: 210 EKEIVREIKEKCCYVASDFRSEI 232
Score = 92.3 bits (219), Expect = 7e-20
Identities = 40/83 (48%), Positives = 58/83 (69%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMT 438
RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+
Sbjct: 66 RGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIA 125
Query: 439 QIMFETFNTPAMYVAIQAVLSLY 507
+ +ET N PA+ ++Q VL+LY
Sbjct: 126 EYFYETLNVPALSFSLQPVLALY 148
Score = 67.7 bits (158), Expect = 2e-12
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAR 256
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQ 63
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (244), Expect = 6e-23
Identities = 44/79 (55%), Positives = 60/79 (75%)
Frame = +3
Query: 513 GRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE 692
G ++G+V+DSGDGV+H VP+YE L H + RLD+AGRD T YL+ +L +GY+F TA+
Sbjct: 146 GLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTAD 205
Query: 693 REIVRDIKEKLCYVALDFE 749
E VR++KEKLCYV+ D E
Sbjct: 206 FETVREMKEKLCYVSYDLE 224
Score = 99.5 bits (237), Expect = 4e-22
Identities = 41/82 (50%), Positives = 62/82 (75%)
Frame = +1
Query: 262 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 441
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 442 IMFETFNTPAMYVAIQAVLSLY 507
MFE + +YVAIQAVLSLY
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLY 143
Score = 54.8 bits (126), Expect = 1e-08
Identities = 30/59 (50%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Frame = +2
Query: 89 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEARA 259
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA A
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEA 60
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 98.7 bits (235), Expect = 8e-22
Identities = 41/77 (53%), Positives = 53/77 (68%)
Frame = +1
Query: 274 TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFE 453
+L YPI HG + NWD ME+ W + + LR PE+H LLTE PLNP NRE +IMFE
Sbjct: 89 SLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFE 148
Query: 454 TFNTPAMYVAIQAVLSL 504
+FN +Y+A+QAVL+L
Sbjct: 149 SFNCAGLYIAVQAVLAL 165
Score = 66.9 bits (156), Expect = 3e-12
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Frame = +3
Query: 522 TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 695
TG V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +L +R S TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239
Query: 696 EIVRDIKEKLCYVALDFEQE 755
IKE+ CYV D +E
Sbjct: 240 -----IKEECCYVCPDIVKE 254
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDE 250
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ +
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASK 58
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/82 (35%), Positives = 46/82 (56%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 465
P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE +N
Sbjct: 86 PFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFELYNA 144
Query: 466 PAMYVAIQAVLSLYGPVVPPVS 531
P++ I + S Y P S
Sbjct: 145 PSVAYGIDGLFSFYHNTKPSSS 166
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/80 (23%), Positives = 37/80 (46%)
Frame = +3
Query: 519 TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 698
++GIVL+ G+ SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224
Query: 699 IVRDIKEKLCYVALDFEQEM 758
+ C+V+ D+ ++
Sbjct: 225 QAELLMHDHCHVSSDYTHDI 244
Score = 35.9 bits (79), Expect = 0.006
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 196
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/79 (36%), Positives = 43/79 (54%)
Frame = +1
Query: 271 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 450
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 451 ETFNTPAMYVAIQAVLSLY 507
E+ PA Y+A Q + +
Sbjct: 123 ESLRCPATYLAKQETCAAF 141
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 187
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 28.7 bits (61), Expect = 0.95
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +3
Query: 501 AVRSGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 671
A SG+ T ++D G S IY+G+ L +G + D L + L ++ +
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/77 (35%), Positives = 50/77 (64%)
Frame = +3
Query: 528 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 707
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ E IV
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216
Query: 708 DIKEKLCYVALDFEQEM 758
+IKE +CYV+ +F+++M
Sbjct: 217 EIKESVCYVSQNFKEDM 233
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 21/67 (31%), Positives = 39/67 (58%)
Frame = +1
Query: 295 HGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAM 474
+GI+ +W+ W +L+V P E+ +++TE NP++ R+++ + FE + PA
Sbjct: 74 NGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAF 133
Query: 475 YVAIQAV 495
Y+ QAV
Sbjct: 134 YLTKQAV 140
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/55 (34%), Positives = 32/55 (58%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 250
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDE 56
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 39.9 bits (89), Expect = 4e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +1
Query: 286 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 453
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 454 TFNTPAMYVAIQAVLSLY 507
P +A + ++ LY
Sbjct: 172 ECQVPGFTIAYEPLMGLY 189
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.10
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 346 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 489
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.41
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 243 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 82
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.5 bits (63), Expect = 0.54
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +3
Query: 510 SGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 677
+G + V+D G + + EG +P++ ++++ G D+T MK+L + +
Sbjct: 288 AGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 254 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 165
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/66 (25%), Positives = 29/66 (43%)
Frame = -2
Query: 318 IPVSDDSVFDGVFEGQDTSFARASSPT*ESFCPIPTITP*WRGLPTIEGNTARGASSPAK 139
+P + +V +TSFA ++ S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 138 PALHIP 121
P L+ P
Sbjct: 123 PQLNSP 128
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 246 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 130
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 511 PVVPPVSCWTPATVSPTPCPSTRDTHSPTPS 603
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 26.6 bits (56), Expect = 3.8
Identities = 23/58 (39%), Positives = 27/58 (46%)
Frame = -1
Query: 277 GSGYLFCSCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 104
G G F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 49 GLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 146 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDE 250
G+ PRA F ++ P H G+++ M KD G+E
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEE 534
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 388 LLTEAPLNPKANREKMTQIMFETFN 462
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 299 PCSMGYLRVRIPLLLVPHLLHKSPSVPYRP 210
P + Y PL VP +L PSV Y P
Sbjct: 349 PLQLSYAHYATPLPAVPTVLSGLPSVAYTP 378
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +1
Query: 520 PPVSCWTPATVSPTPCPSTRDTHSP 594
PPV+C TP P C + H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 375 LGGDTQLIVEGMMPNLLHVIPVSDDSVFDGVFEGQDTSFARAS 247
+GG +++ V ++ + +V +GV G TSF +AS
Sbjct: 413 VGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKAS 455
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 452 KHSTRPPCTSPSKPCSRCTVRSYHRYRAGLR 544
KH+ R SKP TVR+ H++ + R
Sbjct: 942 KHTIRYAVYPHSKPLDSSTVRAAHKFNSNFR 972
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,286,516
Number of Sequences: 5004
Number of extensions: 74097
Number of successful extensions: 262
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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