Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0889
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    32   0.11 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    30   0.33 
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    28   1.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.3  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   5.3  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   9.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 232 SSYKCTERQHLESGGDELAEVPWRHQQ 312
           S+Y    R  LES  ++L EVPW+H Q
Sbjct: 316 SNYLSPNRAELESTPEQLLEVPWQHHQ 342


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 607 SSKISLQFHNPKR*LGRQLPVSRQSRAFFAERRNKEERAW 726
           +SK+ L  ++PK  L  QLP    S+  FA+   +   AW
Sbjct: 320 TSKVVLNLNDPKLLLQPQLPKKEDSQRSFADTHQRNSLAW 359


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 654 PKSSFWVVKLKRYL*ALVDGPCPVCGHQG 568
           PK  F+V +  R       G CP+C HQG
Sbjct: 217 PKDDFYVPRFTRGHGISKLGLCPICSHQG 245


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 355 SAAGVFGPSTTPFSTAAFG 411
           +  G+FG STTP +T AFG
Sbjct: 145 TGGGLFGSSTTPATTNAFG 163


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
            subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +1

Query: 286  AEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAAFGQPA 420
            A  P++  Q P Y  P SSA      G+  PS +P S      PA
Sbjct: 1527 AASPYKGVQSPGYTSPFSSA-MSPGYGLTSPSYSPSSPGYSTSPA 1570


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 316 PSYAPPISSADPYSAAGVFGPSTTP 390
           P Y+  ISSADP S AG+    TTP
Sbjct: 247 PGYSIEISSADPGSLAGIH--ITTP 269


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 286 AEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAA 405
           + VP+ H+ Q S  P      P +A      ST PF+  A
Sbjct: 336 SSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINA 375


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 310 QQPSYAPPISSADPYSAAGVFGPS 381
           Q PS APP+   + Y+A G   P+
Sbjct: 157 QPPSAAPPVPGKENYNAVGSKSPN 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,941
Number of Sequences: 5004
Number of extensions: 61475
Number of successful extensions: 173
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)