Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0889
(782 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0509 - 3713109-3713244,3713689-3713733,3713959-3714015,371... 36 0.048
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 30 1.8
02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057... 30 2.4
10_06_0036 - 9914606-9915561,9916287-9916368 29 3.2
11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966 29 4.2
03_05_1123 - 30554938-30555075,30555719-30556077,30556136-30556280 29 4.2
02_05_0848 + 32195610-32195625,32196078-32197585 29 4.2
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 29 5.5
01_06_0197 + 27416724-27417119 28 7.3
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 28 9.6
12_01_0060 - 499291-501228 28 9.6
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 28 9.6
08_02_0765 - 20969322-20969798 28 9.6
07_03_1061 + 23651404-23651625,23651764-23652954 28 9.6
02_05_1064 - 33842970-33843344,33843596-33843641,33844124-338441... 28 9.6
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 28 9.6
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 28 9.6
>01_01_0509 -
3713109-3713244,3713689-3713733,3713959-3714015,
3714088-3714438,3714585-3714862,3714939-3715289,
3715378-3715647,3716035-3716103,3716194-3716304,
3716503-3716583,3716825-3716914,3717032-3717262
Length = 689
Score = 35.5 bits (78), Expect = 0.048
Identities = 27/84 (32%), Positives = 37/84 (44%)
Frame = +1
Query: 184 ANVSRRVRSADERARESSYKCTERQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAA 363
A+ ++ AD+RAR + E+ G VP+ Q S S+ P SAA
Sbjct: 84 ASRTQNAAPADDRARNDHLNDHFERRTEAAGSHAQNVPFTEQNTRSN----PSSQPCSAA 139
Query: 364 GVFGPSTTPFSTAAFGQPASTFNY 435
GV+ P+ FS AA G S Y
Sbjct: 140 GVY-PAQNVFSEAASGDRTSPEAY 162
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 337 SSADPYSAAGVFGPSTTPFSTAAFGQPASTFNYF 438
S+ P G+FG ++PFS+ AF Q A T + F
Sbjct: 396 STPTPGMTGGLFGSMSSPFSSTAFQQSAPTPSMF 429
>02_03_0192 -
16204575-16204582,16204798-16204966,16205708-16205785,
16206442-16206567,16206723-16206968,16207368-16207487,
16207947-16208198,16208441-16208517,16208581-16208680,
16210071-16210511
Length = 538
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/109 (25%), Positives = 42/109 (38%), Gaps = 13/109 (11%)
Frame = +1
Query: 307 QQQPSYAPPISSADPYSAAGVFGPSTTPFST--AAFGQPASTFNYFHG-----------N 447
Q P +P I S D + P +P+ T +F + TF F N
Sbjct: 342 QPIPDLSPVIPSVDEMPSVD---PEVSPYETNIISFYKTWDTFGAFSNFSPHPIHMPDEN 398
Query: 448 GDYSTWGQLGRAKQYDDYYRVMDFTCQMVLKQLKLGYKPCPLVTTNRTR 594
GDY TW + Q + V D + +++++KL P RTR
Sbjct: 399 GDYFTWPTVEHYYQAHKFIGVDDPQAREIVQEIKLAKSPEEAARIGRTR 447
>10_06_0036 - 9914606-9915561,9916287-9916368
Length = 345
Score = 29.5 bits (63), Expect = 3.2
Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
Frame = +1
Query: 316 PSYAPPIS--SADPYSAAGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQ 489
P+ +PP+S + P +AAG P + P + A QP S GNG W
Sbjct: 210 PATSPPMSMPATPPEAAAGGMAPCSAPPTAAMSPQPCSGEG---GNGG-GQWCVAKPTVP 265
Query: 490 YDDYYRVMDFTC 525
D MD+ C
Sbjct: 266 LDRLQEAMDYAC 277
>11_01_0486 - 3738887-3738986,3739557-3740826,3741894-3741966
Length = 480
Score = 29.1 bits (62), Expect = 4.2
Identities = 24/77 (31%), Positives = 32/77 (41%)
Frame = +1
Query: 220 RARESSYKCTERQHLESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFST 399
R + +K T RQ G AE R + PP + SA GP+TT +
Sbjct: 290 READDLFKDTSRQDPVDGATGEAEQKARAAAAAAAPPPTAP----SAMWAVGPNTTGATA 345
Query: 400 AAFGQPASTFNYFHGNG 450
A + QPA F + G G
Sbjct: 346 AFWMQPAWAFPHGAGAG 362
>03_05_1123 - 30554938-30555075,30555719-30556077,30556136-30556280
Length = 213
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 344 PTPTARQVCLDLQLLHSQQRHLDNLPPPSTIFTA 445
P+P+ +Q D + QQ+H+ NL PP +IF +
Sbjct: 15 PSPSPKQR-RDAESKQQQQQHIRNLSPPPSIFVS 47
>02_05_0848 + 32195610-32195625,32196078-32197585
Length = 507
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -3
Query: 669 DWQLTPKSSFWVVKLKRYL*ALVDGPCPVCGHQGTGLVPQLQLF*HHLARKVHHP 505
D Q+ K ++ V+K Y A++ P + T L P+ + HHLAR + HP
Sbjct: 226 DQQVLAKFNWMVIKSDVYFAAMLF-LMPAYERELTQLFPEKEAVFHHLARYLFHP 279
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Frame = +1
Query: 337 SSADPYSA-AGVFGPSTT----PFSTAAFGQPASTFNYFHGNGDYST 462
+S++P+ A G FG + T PF+ FG P + F GN + T
Sbjct: 19 TSSNPFGAQTGGFGQANTTTTNPFAPKPFGSPITAFGAQTGNSPFGT 65
>01_06_0197 + 27416724-27417119
Length = 131
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 208 SADERARESSYKCTERQHLESGGDELAEVPWRHQQQ 315
+A +R +S T R H + E A +PWR QQ
Sbjct: 11 AAPRSSRATSAAATARDHGATAAVETARIPWRWWQQ 46
>12_02_0953 -
24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +1
Query: 265 ESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGVFGPST-TPFSTAAFGQPAS 423
E GG P + +P+Y+ +S++ P ++G G FS AA G P S
Sbjct: 148 EGGGGSTQSTPTKSVTKPAYSIGMSASRPPMSSGQRGAGLGLGFSMAARGTPMS 201
>12_01_0060 - 499291-501228
Length = 645
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 383 LLHSQQRHLDNLPPPSTI-FTATVT 454
LLH QR D +P PST+ +TA +T
Sbjct: 121 LLHRAQRVFDEMPHPSTVSWTALIT 145
>11_01_0059 -
444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 383 LLHSQQRHLDNLPPPSTI-FTATVT 454
LLH QR D +P PST+ +TA +T
Sbjct: 906 LLHRAQRVFDEMPHPSTVPWTALIT 930
>08_02_0765 - 20969322-20969798
Length = 158
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +1
Query: 271 GGDELAEVPWRHQQQ--PSYAPPISSADPYSAAGVFGPSTTPF 393
GGD A +PW P Y PP ++A AAG P PF
Sbjct: 7 GGDGTALLPWPGSAAAAPLYMPPAAAAAAPFAAGEQLPVEQPF 49
>07_03_1061 + 23651404-23651625,23651764-23652954
Length = 470
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = +1
Query: 313 QPSYAPP----ISSADPYSAAGVFGPSTTPFSTAAFGQP 417
+P APP +++AD Y ++ ++G ST F+++ P
Sbjct: 396 EPFSAPPNAYEVNNADTYGSSSIYGDSTWRFTSSEIDMP 434
>02_05_1064 -
33842970-33843344,33843596-33843641,33844124-33844176,
33844255-33844512,33845245-33845430,33845862-33845903,
33846598-33846741
Length = 367
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 415 PASTFNYFHGNGDYSTWG 468
P+S F+Y GDY+ WG
Sbjct: 265 PSSQFSYLKAKGDYAFWG 282
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +1
Query: 268 SGGDELAEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAAFGQPASTFNYFHGN 447
+ GDE A +++P P SSA P +A + S T + A + P++ + G+
Sbjct: 38 AAGDEWAA----EEKRPPTPPQSSSASPPHSAAIVVSSQTHAAAAKYVPPSAAGHVGGGD 93
Query: 448 G-DYSTWGQLGRAKQY 492
G + +W AK Y
Sbjct: 94 GRSWYSWNGGRTAKPY 109
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 27.9 bits (59), Expect = 9.6
Identities = 17/59 (28%), Positives = 21/59 (35%)
Frame = +1
Query: 328 PPISSADPYSAAGVFGPSTTPFSTAAFGQPASTFNYFHGNGDYSTWGQLGRAKQYDDYY 504
PP +A+ Y+ G T STA G + HG G L R Y Y
Sbjct: 154 PPSQAAELYTPRDYIGHGTHTLSTAGGGFVPDASVFGHGKGTAKGGSPLARVAAYKACY 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,171,258
Number of Sequences: 37544
Number of extensions: 447475
Number of successful extensions: 1284
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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