Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0889
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_28102| Best HMM Match : YTH (HMM E-Value=0)                         29   5.6  
SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)                 28   7.4  
SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5)            28   7.4  
SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)                  28   7.4  
SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)                 28   9.8  
SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)                   28   9.8  
SB_7343| Best HMM Match : EGF (HMM E-Value=0)                          28   9.8  

>SB_13178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 191

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 295 PWRHQQQPSYAPPISSADPYSAAGVFGPS 381
           P  + QQP Y P  ++  PYS AGV G S
Sbjct: 147 PMMYPQQPGYYPAGTAPPPYSEAGVAGTS 175


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 292  VPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAAFGQPAST 426
            VP   +Q  + A P+ + DP S A    P TT  +T     PAST
Sbjct: 1152 VPRAERQTVTTAVPVVARDPVSPAVTQRPITTMSTTVVTQHPAST 1196


>SB_28102| Best HMM Match : YTH (HMM E-Value=0)
          Length = 325

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 627 VSQPKKMTWASIASQPAKP 683
           V   K  +WA+IASQPAKP
Sbjct: 48  VPDNKPKSWAAIASQPAKP 66


>SB_40499| Best HMM Match : 7tm_1 (HMM E-Value=6.9e-09)
          Length = 418

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 372 WTFNYSILNSGIWTTCLHLQ 431
           W+ +Y+++   IWTT  HLQ
Sbjct: 345 WSLDYNLVTYVIWTTLFHLQ 364


>SB_24712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 709 KEERAWYAAPTYNTRQAQMDISTW 780
           KE R W + P+Y  R  Q++ + W
Sbjct: 106 KESRRWLSEPSYGYRPQQLNFAVW 129


>SB_28274| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=3.5)
          Length = 529

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 709 KEERAWYAAPTYNTRQAQMDISTW 780
           KE R W + P+Y  R  Q++ + W
Sbjct: 215 KESRRWLSEPSYGYRPQQLNFAVW 238


>SB_3546| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-29)
          Length = 447

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +1

Query: 313 QPSY-APPISSADPYSAAGVFGPSTTPFSTAAF-GQPASTFNYFHGNGDYST 462
           QP Y APP +   PY+A    G    P++T  F GQP      F+G   Y T
Sbjct: 294 QPPYNAPPFTGQPPYNAPPFNG--QPPYNTPPFNGQPPYYTPPFNGQPLYHT 343


>SB_19475| Best HMM Match : C_tripleX (HMM E-Value=0.1)
          Length = 530

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 331 PISSADPYSAAGVFGPSTTPFSTAAFGQPAST 426
           P  + DP   A  FG +T PF T  + QP  +
Sbjct: 284 PCGNEDPDPTANPFGVTTDPFPTDDYQQPTGS 315


>SB_48987| Best HMM Match : Ank (HMM E-Value=2.7e-36)
          Length = 551

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 177 NPGQCQQACQISG*KGKGIKL 239
           N G C + CQI G  GKG +L
Sbjct: 381 NKGPCHRQCQIVGGSGKGARL 401


>SB_7343| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1233

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 274 GDELAEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFST 399
           GD L  VPWR Q        +S AD +    V G S +P  T
Sbjct: 39  GDRLTFVPWREQDFEFQPYNLSKAD-FDKCNVVGTSLSPSLT 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,295,659
Number of Sequences: 59808
Number of extensions: 492438
Number of successful extensions: 1652
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)