Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0889
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82096-2|CAB05032.1|  211|Caenorhabditis elegans Hypothetical pr...    31   0.70 
U60979-1|AAC47277.1|  211|Caenorhabditis elegans CES-2 protein.        31   0.70 
Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical p...    29   5.0  
Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase...    29   5.0  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   6.6  
AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical ...    28   6.6  

>Z82096-2|CAB05032.1|  211|Caenorhabditis elegans Hypothetical
           protein ZK909.4 protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 538 KQLKLGYKPCPLVTTNRTRTVNQSSKISLQFHNPKR*LGRQLPVSRQSRAFFAERRNKEE 717
           K++KL  + C    ++R+ TV+ SS  S    +P R +   +P  ++  A+F  RR   +
Sbjct: 70  KKIKLEDELCASPVSSRSSTVS-SSHFSSPQRSPSRKMSVPIPEEKKDSAYFERRRKNND 128

Query: 718 RA 723
            A
Sbjct: 129 AA 130


>U60979-1|AAC47277.1|  211|Caenorhabditis elegans CES-2 protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 538 KQLKLGYKPCPLVTTNRTRTVNQSSKISLQFHNPKR*LGRQLPVSRQSRAFFAERRNKEE 717
           K++KL  + C    ++R+ TV+ SS  S    +P R +   +P  ++  A+F  RR   +
Sbjct: 70  KKIKLEDELCASPVSSRSSTVS-SSHFSSPQRSPSRKMSVPIPEEKKDSAYFERRRKNND 128

Query: 718 RA 723
            A
Sbjct: 129 AA 130


>Z83123-10|CAB05609.2|  988|Caenorhabditis elegans Hypothetical
           protein T04A11.6 protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 RESSYKCTERQHLESGGDELAEVPW-RHQQQPSYAPPISSADPYSAAGVFGPSTTPF 393
           R+ S +  E +++++G DE   V   R Q+  S+  P+SS   Y  +   GPS++ +
Sbjct: 42  RDPSCEEREEEYIDNGHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSY 98


>Z73422-6|CAH04641.1|  316|Caenorhabditis elegans Hypothetical
           protein B0564.11 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 27  VGCYVNFCTLRTFLTLFGDSHICKTQC 107
           VGCY+NF   +T   +FG  H+   QC
Sbjct: 181 VGCYINF-NCQTSKVMFGCGHVYCEQC 206


>AY095296-1|AAM26298.1|  988|Caenorhabditis elegans RecQ helicase
           protein.
          Length = 988

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +1

Query: 226 RESSYKCTERQHLESGGDELAEVPW-RHQQQPSYAPPISSADPYSAAGVFGPSTTPF 393
           R+ S +  E +++++G DE   V   R Q+  S+  P+SS   Y  +   GPS++ +
Sbjct: 42  RDPSCEEREEEYIDNGHDEEPPVEVNRIQESTSFDEPVSSPPRYRPSENPGPSSSSY 98


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 93  CKTQCSETDVIPFVIAVIKDFNKCFRS*NPGQCQQACQ 206
           C++ C    V P V+ V+ D +    +    QCQQ+CQ
Sbjct: 267 CQSACQSPVVAPQVVNVMLDVSVAQSAQCQPQCQQSCQ 304


>AL032643-6|CAA21657.1|  538|Caenorhabditis elegans Hypothetical
           protein Y54E5A.4 protein.
          Length = 538

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 325 APPISSADPYSAAGVFGPSTTP--FSTAAFGQPAST 426
           A   +SA P    G+FG ST P   +T +FG P +T
Sbjct: 134 AKSTTSAAPTLGGGLFGSSTAPAAAATTSFGAPPAT 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,654,893
Number of Sequences: 27780
Number of extensions: 370454
Number of successful extensions: 1185
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)