Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0889
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.20 
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   2.4  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.2  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = +1

Query: 262  LESGGDELAEVPWRHQQQPSYAPPISSADPY 354
            ++S    L    WR QQ P   PP SS   Y
Sbjct: 1338 IDSDYSTLERTAWRQQQPPPPPPPPSSGQAY 1368


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
 Frame = +2

Query: 620 LFSFTTQKDD--LGVNCQSAGKAAPSSQSGV 706
           L SF  Q +D     NC S GKA    + GV
Sbjct: 23  LLSFKGQVNDSACAANCHSLGKAGGHCEKGV 53


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 3   NVQLRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 113
           N +LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 3   NVQLRTFYVGCYVNFCTLRTFLTLFGDSHIC---KTQCSE 113
           N +LR  Y  C+++  +  T  ++F  SHI    +TQC +
Sbjct: 38  NDRLRNQYYDCFIDAGSCLTPDSVFFKSHITEAFQTQCKK 77


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,295
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)