Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0889
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g40620.1 68418.m04931 hypothetical protein                          33   0.28 
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family...    32   0.49 
At1g10390.1 68414.m01171 nucleoporin family protein contains Pfa...    30   1.5  
At5g46380.1 68418.m05708 hypothetical protein                          27   2.4  
At4g24150.1 68417.m03465 expressed protein ; expression supporte...    29   4.6  
At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase (X...    29   4.6  
At3g03150.1 68416.m00311 expressed protein                             28   6.1  
At1g69320.1 68414.m07950 CLE10, putative CLAVATA3/ESR-Related 10...    28   8.0  
At1g26600.1 68414.m03240 CLE9, putative CLAVATA3/ESR-Related 9 (...    28   8.0  

>At5g40620.1 68418.m04931 hypothetical protein
          Length = 130

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +3

Query: 525 PDGVKTVEAGVQALSLGDHKQDKDRQPELKDISSVSQPKKMTWASIAS 668
           PDGVK V+  +  +   D + D+  QPE K     +QPK    +S +S
Sbjct: 69  PDGVKVVQDDLPLVEEEDKEADEFAQPEGKSDKKANQPKDSASSSYSS 116


>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
           protein
          Length = 513

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
 Frame = +1

Query: 322 YAPPISSADPYSAAGVFGPSTTPFSTAAFG-QPASTF 429
           +A P S+A P S+  +FGPS TP  T  FG  PASTF
Sbjct: 433 FATPSSTA-PTSS--LFGPSPTPTQTPLFGSSPASTF 466


>At1g10390.1 68414.m01171 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 1041

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 316 PSYAPPISSADPYSAAGVFGPSTTPFSTAAFGQPASTF 429
           PS+    +S+  + ++  FG ST+ F ++AFG   S F
Sbjct: 282 PSFGASNTSSFSFGSSPAFGQSTSAFGSSAFGSTPSPF 319


>At5g46380.1 68418.m05708 hypothetical protein
          Length = 607

 Score = 26.6 bits (56), Expect(2) = 2.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 283 LAEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAAFG 411
           +A +P      P   PP  +A PY+ +  +G +  P   +A+G
Sbjct: 491 VAPLPLHRDSYP--CPPTLAAGPYTRSSAYGSANGPAYDSAYG 531



 Score = 21.4 bits (43), Expect(2) = 2.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 439 HGNGDYSTWGQLGRAKQYDDYYRV 510
           H NG  S W   G  +    YYR+
Sbjct: 564 HQNGTSSMWTPPGLNESGSSYYRL 587


>At4g24150.1 68417.m03465 expressed protein ; expression supported
           by MPSS
          Length = 493

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = +1

Query: 262 LESGGDELAEVPWRHQQQPSYAPPISSADPYSAAGVFGPSTTPFSTAAF 408
           +E+   ++  +P  H   PSY+ P SS+  Y +AGV  P  +  S  A+
Sbjct: 58  VENSHKDVMVLP-HHHYYPSYSSPSSSSLCYCSAGVSDPMFSVSSNQAY 105


>At4g00230.1 68417.m00025 subtilisin-like serine endopeptidase
           (XSP1) identical to subtilisin-type serine endopeptidase
           XSP1 GI:6708179 from [Arabidopsis thaliana]
          Length = 749

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 398 QRHLDNLPPPSTIFTATVTIRHGVS*VVQ 484
           +R + N+ PPS+++TATV    GV   V+
Sbjct: 666 RRRVTNVGPPSSVYTATVRAPKGVEITVE 694


>At3g03150.1 68416.m00311 expressed protein
          Length = 121

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 349 PYSAAGVFGPSTTPFSTAAFGQPAST 426
           P+   GVFGPSTT  S  A G    T
Sbjct: 73  PHPKTGVFGPSTTEHSATAEGAHQDT 98


>At1g69320.1 68414.m07950 CLE10, putative CLAVATA3/ESR-Related 10
           (CLE10)
          Length = 107

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 350 PTARQVCLDLQLLH-SQQRHLDNLPPPST 433
           P AR +C++L+ +H S ++ L + PPP T
Sbjct: 57  PYARSMCIELERIHRSSRQPLFSPPPPPT 85


>At1g26600.1 68414.m03240 CLE9, putative CLAVATA3/ESR-Related 9
           (CLE9); similar to hypothetical protein GB:AAF67770
           GI:7705091 from [Arabidopsis thaliana]
          Length = 120

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 350 PTARQVCLDLQLLHSQQRHLDNLPPP 427
           P AR +C++LQ +H   R    L PP
Sbjct: 71  PYARSMCIELQRIHRSSRKQPLLSPP 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,524,664
Number of Sequences: 28952
Number of extensions: 336940
Number of successful extensions: 940
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)