Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0888
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    28   1.2  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    28   1.2  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    27   2.1  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   3.6  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.8  
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc...    25   8.4  

>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 196 DVPVPVQETHSVCDFSACYWILVQSG 273
           D P P +  +   DF  CYWIL + G
Sbjct: 349 DYPFPEEIANRPRDFKLCYWILKEIG 374


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = +2

Query: 260 WYSQGHENEEMRQTRRLLEVMEPSCSRITSLN*QYCVN*ISLAIRFKKKNTFNLN 424
           W  QGH      QTR++L+++E     +  ++        S+A+R    + FN N
Sbjct: 637 WKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKN 691


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -3

Query: 563 DYLSV*CSSFGEICDYNKDYNMTIE 489
           DYL +  SS G +C ++KD+N+ IE
Sbjct: 250 DYL-ITASSDGSVCIWDKDWNLVIE 273


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 272 PDCTRIQ*HAE-KSQTECVS*TGTGTSHVASGIFGRQPV 159
           P+ + +Q +A   SQ   +S   +G S  +SGIFGR P+
Sbjct: 290 PNLSTLQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPI 328


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
            Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 34   VALAAPNTIGDVPIALPSHPRGCVWILGKCSRNCE 138
            VAL A  T+G + + +P HP     + G  SR C+
Sbjct: 907  VALEAWETLGSIGLIIPVHP--STNVSGALSRQCQ 939


>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 697  NKQNITHTAMYLTQHIHTNILFVYCQLSNFCYCQIE 590
            ++ N+T  A Y+ QH  +   FV   L N  + + E
Sbjct: 1167 DQTNVTKIANYIRQHASSGFQFVVISLKNQLFSKSE 1202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,770,497
Number of Sequences: 5004
Number of extensions: 52378
Number of successful extensions: 129
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)