Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0888
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0208 + 26385379-26385485,26385819-26385965,26385994-263860...    31   1.2  
03_02_0671 + 10315260-10315370,10315984-10316027,10316141-103162...    30   1.6  
04_01_0360 - 4720997-4721812                                           30   2.2  
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182...    28   8.8  

>05_06_0208 +
           26385379-26385485,26385819-26385965,26385994-26386035,
           26386231-26386275,26386375-26386544,26386779-26386864,
           26386953-26387060,26387680-26387809,26388144-26388231,
           26388511-26388555,26388639-26388808,26388931-26389016,
           26389115-26389222,26389332-26389381,26389521-26389725
          Length = 528

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 166 CRPKMPEATCDVPVPVQ-ETHSVCDFSACYWILVQSG 273
           C PK  +  CD     Q E H+   +S C+W+LV+SG
Sbjct: 362 CYPKQ-KILCDYLSSRQAECHTTNQYSTCFWMLVKSG 397


>03_02_0671 +
           10315260-10315370,10315984-10316027,10316141-10316204,
           10316278-10316392,10316504-10316571,10316917-10317014,
           10317543-10317657,10318425-10318641,10319541-10319667,
           10319803-10319857,10319997-10320093,10320748-10320876,
           10320964-10321097,10321660-10321746,10321998-10322069,
           10322320-10322359,10322535-10322779,10323587-10323764,
           10323931-10324136,10324681-10324977
          Length = 832

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = -1

Query: 64  LRWCWERQE-LPRLKHTT 14
           +RWCWE  E LPR+K T+
Sbjct: 426 IRWCWEESERLPRMKSTS 443


>04_01_0360 - 4720997-4721812
          Length = 271

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 109 STRSHEDARAGLSGHLRWCWERQELPRLKHTT 14
           + R  E  R G  G+ +W +  ++ PRL H T
Sbjct: 204 AARERESKRLGFEGYAQWAYFFEKAPRLPHIT 235


>03_05_0142 -
           21217375-21217518,21217851-21217899,21218191-21218258,
           21218368-21218413,21218548-21218641,21218775-21218837,
           21219018-21219171,21219414-21219476,21219568-21219681,
           21219779-21219844,21220813-21220870,21221859-21221932,
           21222045-21222110,21223139-21223187,21223483-21223550,
           21223660-21223705,21223908-21224001,21224117-21224179,
           21224290-21224412,21224503-21224536,21224906-21224968,
           21225825-21225911,21226293-21226370
          Length = 587

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 115 GKCSRNCEEGTHSYTTGCRPKMPEATCDVPVPVQETHSVCDFS 243
           G   ++   G   YTT  RP  P AT   P+P +      DFS
Sbjct: 308 GSAGQSSYSGGAFYTTQSRPSAPPATHLSPLPPEPADFYNDFS 350


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,135,084
Number of Sequences: 37544
Number of extensions: 326078
Number of successful extensions: 911
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)