Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0888
         (733 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)                    31   0.73 
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.96 
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                30   1.7  
SB_6035| Best HMM Match : TSP_1 (HMM E-Value=0.046)                    29   3.9  
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)                        29   5.1  
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)                  28   9.0  

>SB_3431| Best HMM Match : EGF (HMM E-Value=1.8e-08)
          Length = 480

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = +1

Query: 130 NCEEGTHSYTTGCRPKMPEATCDVPVPVQETHSVC-DFSACYWILVQSGTRKRRNASNSK 306
           NC +  ++YT  C+P      C++   V+     C  FS  Y I   +G+    +     
Sbjct: 207 NCTDQVNNYTCTCQPGYTGRNCEIACSVRIFKPACFTFSDVYRIRTPNGSGALSDVYCEM 266

Query: 307 TARSDGTK--LFSYNIAQ 354
           T    G K  LFS+ + +
Sbjct: 267 TKMDGGNKYHLFSFVVLE 284


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +1

Query: 82  PSHPRGCVWI-LGKCSRNCEEGTHSYTTGCRPKMPEA---TCDVPVPVQETHSVCDFSAC 249
           P H     W   G C+R C+ G H  T  C   +P A    C +  P +E+   C+ + C
Sbjct: 429 PIHGGFSEWTDFGNCTRECDGGVHYRTRSCTNPVPFAGGEGCSLLGPARESRQ-CNTNPC 487


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = +1

Query: 1    RCLIMLCALIAVALAAPNTIGDVPIAL--PSHPRGCVWILGKCSRNCEEGTHSYTTGCRP 174
            +CL   C  +     + +  GD+   L  PS  R C    G CS+NC E        C P
Sbjct: 3336 KCLNRRCVPVRAVCDSNDDCGDISDELQCPSTNRTCAVNNGGCSQNCTERDSHVICSCWP 3395


>SB_6035| Best HMM Match : TSP_1 (HMM E-Value=0.046)
          Length = 173

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = +1

Query: 88  HPRGCVWILGKCSRNCEEGTHSYTTGC--RPKMPEATCDVPVPVQETHSVCDFSAC 249
           H R CV    +CS+ C  G  + T  C  R   P   C     ++ T   C  + C
Sbjct: 60  HQRSCVLFFRQCSKTCGRGLQTRTVECFDRDGKPSFLCTDESRMRSTKH-CTLNDC 114


>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2681

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 118  KCSRNCEEGTHSYTTGCRPKMPEATCDVPVPVQETHSVCDFSAC 249
            KC+ +C +G  S +  C    PE      V   E    CD+  C
Sbjct: 1496 KCTSSCGKGVRSRSRSCTAPAPELGGKPCVGPTEQTMACDYGDC 1539


>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
          Length = 776

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 184 EATCDVPVPVQETHSVCDFSACYWILVQSGTRKRRNASNSKTARSDGTKLFSYNIAQLT 360
           + TC+  V ++E + V  FS C   L+ +   K  +   SK   + GT ++  N    T
Sbjct: 392 DITCNCGVAIREGNDVIVFSTCNDELIYNQPTKLISKIRSKGNLAPGTHIYKNNTGSQT 450


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,764,028
Number of Sequences: 59808
Number of extensions: 401767
Number of successful extensions: 1357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1356
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)