Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0888
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.      28   5.9  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    28   7.8  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    28   7.8  

>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
 Frame = +1

Query: 100 CVWILGKCSRNCEEGTHSYTTGC-RPKMPEA-TCDVP---VPVQETHSVCDFSA-CYW 255
           C W    CS  C  G  + T GC  P   EA TC  P     + E  S C++S  C+W
Sbjct: 658 CEW--SGCSSKCGPGQRTRTRGCLGPNGQEATTCQGPSIETTLCEGQSCCNWSEWCHW 713


>U22832-2|AAA64509.2|  571|Caenorhabditis elegans Hypothetical
           protein C09F5.1 protein.
          Length = 571

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +3

Query: 612 FDN*QYTNSIFVCMCCVKYMAVCVMFCLLV*CIFYALFKK 731
           F+N +YT  +   +CC+  + + ++F + +  IF A+F +
Sbjct: 274 FENSEYTPELLRSLCCILLLLLLLLFLMFI--IFNAIFNR 311


>Z29967-2|CAA82855.1|  722|Caenorhabditis elegans lin-15A protein.
          Length = 722

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 111 PRKMLKELRRRHPQLHDRLPP 173
           PR+M+K +R R+P L ++ PP
Sbjct: 669 PRRMIKVVRNRNPHLANKWPP 689


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
 Frame = +1

Query: 1   RCLIMLCALIAVALAAPNTIGDVPIALPSHPRGCVW-ILGKCSRNCEEGTHSYTTGCRPK 177
           RC+I+L A +A+A+A  ++I +   A      GC   +   CS  C++ +  Y+  C+P 
Sbjct: 2   RCVIILFA-VALAVAQASSIRETRQA----SCGCAQSVQPTCS--CQQASQQYSCSCQPS 54

Query: 178 MPEATCDVPVPVQETHSVCDFSAC 249
            P  +C      Q   S C   AC
Sbjct: 55  TP-CSCASSQQYQLQTSQC-MPAC 76


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 194  VTCQFQFKRHTPFATSPRATGSWYSQGHENEEMRQTRRLLEVME 325
            +T  F+ + H    T     G W  + H NE +    R +EV++
Sbjct: 3564 ITPVFKIQEHVRQPTEQVVQGFWSKERHPNETVEVVNRKIEVLK 3607


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/44 (27%), Positives = 20/44 (45%)
 Frame = +2

Query: 194  VTCQFQFKRHTPFATSPRATGSWYSQGHENEEMRQTRRLLEVME 325
            +T  F+ + H    T     G W  + H NE +    R +EV++
Sbjct: 3564 ITPVFKIQEHVRQPTEQVVQGFWSKERHPNETVEVVNRKIEVLK 3607


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,986
Number of Sequences: 27780
Number of extensions: 309976
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 957
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)