Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0888
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.0  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/28 (28%), Positives = 12/28 (42%)
 Frame = +1

Query: 172 PKMPEATCDVPVPVQETHSVCDFSACYW 255
           P+ PE+ C +P  V +         C W
Sbjct: 580 PEPPESVCSLPCEVGQAKKYVAGEQCCW 607


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +1

Query: 28  IAVALAAP-NTIGDVPIALPSHPRGCVWILGKCSRNCEEGTHSYTTGCRPKMPEATCDVP 204
           I + LA+P    G  P    + P   V         C   TH+ T GC  ++ +     P
Sbjct: 385 IGIILASPLKREGGPPTGATTGPNEIVTCTNCGPNPC---THTTTNGCTAELRKKEPPHP 441

Query: 205 VPVQETHSV 231
           + V +T  V
Sbjct: 442 IRVAKTIDV 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,583
Number of Sequences: 438
Number of extensions: 3823
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)