Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0887
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    28   1.4  
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce...    27   4.1  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    27   4.1  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    26   5.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   9.6  

>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -2

Query: 222 DGSCTICECRRTKPSSGPRQLQG-TQRLANNMTIINTRLNSKSIFFK 85
           DG+ +       KPS+ P +    TQR     T + T+LN+K+I FK
Sbjct: 388 DGNTSSPSKEEEKPSTEPEKPSVVTQRKETTGTKLGTKLNAKAISFK 434


>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 642 FWSEHVSAHFSLHNNDIFNNLYNLIV 719
           FWS H+S   S  N +  NN++ L++
Sbjct: 222 FWSHHLSKLESTANTETANNIHKLLL 247


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +3

Query: 534 HLMYLCSLVYSLRKRDKNQC-FMYICTLTLAFGV*LIFWSEHVSAHFSLHNNDIFNNLYN 710
           +L+YL  +VY  RK+D     F+  C L   F     FWS  +    S+ + +    + +
Sbjct: 174 YLLYLSGVVYRKRKQDSKAIDFLKSCVLKAPF-----FWSAWLELSLSIDSLETLTTVVS 228

Query: 711 LIVHT 725
            +  T
Sbjct: 229 QLPST 233


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 557 SLFLEKTGQKPVFYVYLYIDACFWSLINFLER 652
           S+ + KTG    F +Y+ +  CF  L ++L R
Sbjct: 345 SMHISKTGPTHSFIIYIQMQLCFDDLESYLIR 376


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 506 ENITTLVFETFDVFVFFSLFLEKTG--QKPVFYVYLYIDACFWSLINFLER 652
           E   T  FE+   F   S +L+K+     P+F  + +I  CF++ +  L+R
Sbjct: 217 EEACTFFFESAHFFAQCS-YLKKSNFPSPPLFTAWTWIKPCFFNFVILLKR 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,100
Number of Sequences: 5004
Number of extensions: 60883
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)