Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0887
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0142 - 1022387-1022518,1022627-1022671,1022750-1022850,102...    28   7.6  

>02_01_0142 -
           1022387-1022518,1022627-1022671,1022750-1022850,
           1023102-1023205,1023352-1023453,1024190-1024404
          Length = 232

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 195 RRTKPSSGPRQLQGTQRLANNMTIINTRLNS 103
           R + P SGP  ++ T  +   +TI+ TRL+S
Sbjct: 29  RGSLPQSGPEIMRHTSAIRRKITILGTRLDS 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,423
Number of Sequences: 37544
Number of extensions: 293903
Number of successful extensions: 506
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)