Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0887
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_56263| Best HMM Match : G-alpha (HMM E-Value=3.6)                   29   4.4  

>SB_21527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 527

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 545 FVFFSLFLEKTGQKPVFYVYLYIDACFWSLI 637
           F+   LF++  G +P+ Y YL +D C + L+
Sbjct: 270 FLAVYLFIQVKGSRPMTYQYLTVDMCEYVLV 300


>SB_56263| Best HMM Match : G-alpha (HMM E-Value=3.6)
          Length = 700

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -2

Query: 174 GPRQLQGTQRLANNMTIINT--RLNSKSIFFKT 82
           G  QLQGT++  N + II+T   L SK+I F T
Sbjct: 303 GVEQLQGTEKNENKLGIISTSATLESKNISFST 335


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,170,114
Number of Sequences: 59808
Number of extensions: 397686
Number of successful extensions: 863
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)