Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0886
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0753 + 22806544-22806858,22807214-22807609,22807709-228078...    28   6.9  
11_04_0160 + 14247463-14247584,14247710-14247923,14250099-142502...    28   6.9  

>12_02_0753 +
           22806544-22806858,22807214-22807609,22807709-22807840,
           22807977-22808354
          Length = 406

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +2

Query: 521 VSLLFAVYFKKSDMSMSTECNNNYTRMIKSLFFHIKLNME*INFTLYFM 667
           V + +  YF     ++S EC + + +M++  F + + N+E +NF  +F+
Sbjct: 280 VKVRYYAYFNNVQQNVSLECLDLHLKMVE--FINYQGNVEDLNFIRFFV 326


>11_04_0160 + 14247463-14247584,14247710-14247923,14250099-14250215,
            14251578-14251670,14251748-14251922,14252981-14253017,
            14253842-14253875,14254212-14254481,14255768-14255872,
            14256295-14256392,14256474-14256616,14257197-14257290,
            14257378-14257487,14258018-14258172,14258252-14258332,
            14258415-14258535,14259358-14259464,14259537-14259668,
            14261105-14261258,14264094-14264211,14264344-14264517,
            14264831-14264882,14265450-14265577,14265670-14265820,
            14265904-14266242
          Length = 1107

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 573  LNATIITLV*SNHFFSI*NLTWNELISLYILWGFFLFVPNSGLIVIIYVPC 725
            L A ++TL  ++  F      W   I+ YI+  F   +P++G+  I++  C
Sbjct: 935  LQAFVVTLEMNSFTFVQFLAIWGNFIAFYIINFFISSIPSAGMYTIMFRLC 985


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,972,763
Number of Sequences: 37544
Number of extensions: 270774
Number of successful extensions: 378
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)