Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0886
         (747 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 339 KRQKFVDMLFVANFEIIMYFLIRIKVKDI 253
           ++++F+   F AN E   YFL   K KD+
Sbjct: 648 RQKEFLPKEFPANIEGTSYFLNDYKHKDV 676


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 368 QKACETKKKKRDKNL 324
           QK  + KKK+R KNL
Sbjct: 1   QKVHQLKKKRRKKNL 15


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 371 RQKACETKKKKRDKNL 324
           R+K  E K+K ++KNL
Sbjct: 460 REKIIEEKRKNKNKNL 475


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/33 (24%), Positives = 16/33 (48%)
 Frame = -2

Query: 101 LNQIYIHIPLLFHSQVQFTNKRPTRFIYFYRHQ 3
           L+  + H+   F   ++  NK     +++Y HQ
Sbjct: 207 LHHWHWHLVYPFEGDIRIVNKDRRGELFYYMHQ 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,730
Number of Sequences: 438
Number of extensions: 4148
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)