Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0885
(701 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 155 8e-37
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 153 4e-36
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 151 1e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 142 7e-33
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 139 5e-32
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 129 7e-29
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 123 4e-27
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 119 6e-26
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 115 1e-24
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 112 7e-24
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 103 3e-21
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 91 2e-17
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 81 3e-14
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 77 3e-13
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 76 1e-12
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 73 9e-12
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 68 2e-10
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 66 6e-10
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 63 6e-09
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 61 3e-08
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 59 9e-08
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 56 1e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 56 1e-06
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 55 1e-06
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 54 3e-06
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 53 6e-06
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 52 1e-05
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 50 6e-05
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 50 7e-05
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 44 0.003
UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2; Thermoprote... 44 0.005
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 43 0.006
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 40 0.059
UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_030005... 38 0.32
UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransfera... 38 0.32
UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: V... 38 0.32
UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1; ... 38 0.32
UniRef50_A5KAS9 Cluster: Tryptophan-rich antigen; n=3; cellular ... 36 0.96
UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108, w... 36 0.96
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 35 1.7
UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacill... 35 1.7
UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1; ... 35 1.7
UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN full-... 34 3.9
UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to Tyrosine-p... 33 5.1
UniRef50_UPI00006A1FE8 Cluster: Coiled-coil domain-containing pr... 33 5.1
UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens "Keratin... 33 5.1
UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4... 33 5.1
UniRef50_Q0DW21 Cluster: Os03g0101400 protein; n=1; Oryza sativa... 33 5.1
UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.1
UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1; Psychroba... 33 6.8
UniRef50_A0TIV4 Cluster: Putative uncharacterized protein; n=2; ... 33 6.8
UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p... 33 9.0
UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1; Acantha... 33 9.0
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 155 bits (377), Expect = 8e-37
Identities = 70/84 (83%), Positives = 77/84 (91%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QRL+KVDGKVR
Sbjct: 18 WMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQRLVKVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TDPTYPAG+MDV+++EKT E FRL
Sbjct: 78 TDPTYPAGYMDVITLEKTGEFFRL 101
Score = 148 bits (359), Expect = 1e-34
Identities = 66/89 (74%), Positives = 75/89 (84%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YDVKGRF IHRI+ EEAKYKLCKVK+ G K VP+LVTHDGRTIRYPDPLI NDS+Q
Sbjct: 102 VYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQ 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
+DIA+ KI D+IKF+SGNLCMITGG G
Sbjct: 162 VDIASGKITDYIKFDSGNLCMITGGRNLG 190
Score = 120 bits (290), Expect = 3e-26
Identities = 54/66 (81%), Positives = 60/66 (90%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G RNLGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG+
Sbjct: 185 GGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGV 244
Query: 682 RLTIAE 699
+L+IAE
Sbjct: 245 KLSIAE 250
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 153 bits (371), Expect = 4e-36
Identities = 70/84 (83%), Positives = 76/84 (90%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVR
Sbjct: 18 WMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDV+SI+KT E FRL
Sbjct: 78 TDITYPAGFMDVISIDKTGENFRL 101
Score = 151 bits (367), Expect = 1e-35
Identities = 64/89 (71%), Positives = 76/89 (85%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
IYD KGRF +HRITPEEAKYKLCKV+++ G K +P+LVTHD RTIRYPDPLIKVND+IQ
Sbjct: 102 IYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQ 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
+D+ T KI DFIKF++GNLCM+TGG G
Sbjct: 162 IDLETGKITDFIKFDTGNLCMVTGGANLG 190
Score = 112 bits (270), Expect = 7e-24
Identities = 48/66 (72%), Positives = 59/66 (89%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G NLGR+G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K +ISLPRGKGI
Sbjct: 185 GGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGI 244
Query: 682 RLTIAE 699
RLTIAE
Sbjct: 245 RLTIAE 250
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 151 bits (367), Expect = 1e-35
Identities = 69/84 (82%), Positives = 75/84 (89%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI QR IK+DGKVR
Sbjct: 18 WMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYP GFMDV+SI+KT E FRL
Sbjct: 78 TDITYPTGFMDVISIDKTGEHFRL 101
Score = 115 bits (277), Expect = 1e-24
Identities = 49/66 (74%), Positives = 60/66 (90%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G NLGR+G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K ++SLPRGKGI
Sbjct: 217 GGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKPWVSLPRGKGI 276
Query: 682 RLTIAE 699
RLTIAE
Sbjct: 277 RLTIAE 282
Score = 111 bits (267), Expect(2) = 2e-29
Identities = 45/71 (63%), Positives = 59/71 (83%)
Frame = +2
Query: 308 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGN 487
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVND++++D+ T KI DFIKF++ N
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVNDTVRIDLDTGKITDFIKFDTSN 211
Query: 488 LCMITGGVTWG 520
+CM+TGG G
Sbjct: 212 MCMVTGGANLG 222
Score = 40.7 bits (91), Expect(2) = 2e-29
Identities = 17/19 (89%), Positives = 18/19 (94%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAK 310
IYDVKGRFT+HRIT EEAK
Sbjct: 102 IYDVKGRFTVHRITAEEAK 120
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 142 bits (344), Expect = 7e-33
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVR
Sbjct: 18 WMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDVVSI KTNE FRL
Sbjct: 78 TDKTYPAGFMDVVSIPKTNENFRL 101
Score = 124 bits (299), Expect = 2e-27
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+
Sbjct: 102 LYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIK 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
LD+ KI++FIKF+ GN+ M+TGG
Sbjct: 162 LDLEENKIVEFIKFDVGNVVMVTGG 186
Score = 103 bits (246), Expect = 6e-21
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 478 VRELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 657
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 658 SLPRGKGIRLTIAE 699
SLP+GKGI+LTI E
Sbjct: 237 SLPKGKGIKLTIIE 250
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 139 bits (337), Expect = 5e-32
Identities = 59/87 (67%), Positives = 72/87 (82%)
Frame = +2
Query: 260 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 439
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+ND+IQ+D
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMNDTIQID 135
Query: 440 IATTKIMDFIKFESGNLCMITGGVTWG 520
+ T KI DF KF++GNLCM+TGG G
Sbjct: 136 LETGKITDFFKFDTGNLCMVTGGTNLG 162
Score = 104 bits (250), Expect = 2e-21
Identities = 47/58 (81%), Positives = 51/58 (87%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGK 176
WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+EV KI Q IK+DGK
Sbjct: 18 WMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKIRMQHFIKMDGK 75
Score = 103 bits (248), Expect = 3e-21
Identities = 44/66 (66%), Positives = 55/66 (83%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G NLGR+G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG +ISLP GKGI
Sbjct: 157 GGTNLGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNIPWISLPHGKGI 216
Query: 682 RLTIAE 699
R TIAE
Sbjct: 217 RFTIAE 222
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 129 bits (311), Expect = 7e-29
Identities = 56/84 (66%), Positives = 66/84 (78%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G EV IVK R IK+DGK+R
Sbjct: 18 WMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGREVTMIVKNRTIKIDGKIR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD YP GFMDV+SI +T E FRL
Sbjct: 78 TDTRYPVGFMDVLSIPRTKENFRL 101
Score = 103 bits (248), Expect = 3e-21
Identities = 43/85 (50%), Positives = 64/85 (75%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+Y+ K RF + +T E+AK+KLCK+++ G +PY+VTHDGRTIRYP P ++ ND+I+
Sbjct: 102 MYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGTGAIPYIVTHDGRTIRYPHPELQANDTIK 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
L++ T KI+DF+KF+ GN M+ GG
Sbjct: 162 LNLETGKIVDFVKFDIGNTAMMIGG 186
Score = 91.9 bits (218), Expect = 1e-17
Identities = 40/61 (65%), Positives = 49/61 (80%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G +GRVG IV RE HPGSF+IVHIKD+ G+TF TRLNNVF+IGKGT+ ++LP KGI
Sbjct: 185 GGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGKGTETLVNLPLDKGI 244
Query: 682 R 684
+
Sbjct: 245 K 245
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 123 bits (297), Expect = 4e-27
Identities = 55/84 (65%), Positives = 67/84 (79%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W+L K G +A PSTGPHKLRECLP+ IFLR+RLKYALT E + IVK+RL+KVDGKVR
Sbjct: 32 WLLAKSAGKFASHPSTGPHKLRECLPINIFLRDRLKYALTAKEAVAIVKRRLVKVDGKVR 91
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
T+ YP G MDV+ + K+NELFR+
Sbjct: 92 TNYRYPTGLMDVIELGKSNELFRI 115
Score = 94.7 bits (225), Expect = 2e-18
Identities = 39/85 (45%), Positives = 60/85 (70%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
IYD KGRF +H I +EA +KL +V + G K +P++VTHDGRTI Y DP ++V+D+++
Sbjct: 116 IYDCKGRFCVHHIEAKEASFKLLRVNQFKIGAKGIPHVVTHDGRTISYVDPSVRVHDALK 175
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
+I T ++ IKF+ G++ M+T G
Sbjct: 176 FNIKTGEVESVIKFKVGDVAMVTAG 200
Score = 72.9 bits (171), Expect = 7e-12
Identities = 34/63 (53%), Positives = 45/63 (71%)
Frame = +1
Query: 511 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLT 690
N+GRVGTI E+ SFDIVH+KD++G FATR+ NVF+IG+ ISLP +G+R +
Sbjct: 202 NVGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGENEHPLISLPAREGVRPS 261
Query: 691 IAE 699
I E
Sbjct: 262 ILE 264
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 119 bits (287), Expect = 6e-26
Identities = 60/84 (71%), Positives = 65/84 (77%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALTG+EV KI Q IKVDGK+R
Sbjct: 29 WMLDKLTGVFAARPSTGPHKLRECLPH-IFLRNRLKYALTGDEVKKICMQWFIKVDGKIR 87
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD P MDV+SI+K E F L
Sbjct: 88 TDNNLPYWIMDVISIDKMGEDFCL 111
Score = 118 bits (285), Expect = 1e-25
Identities = 50/89 (56%), Positives = 68/89 (76%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
IY + RF +HRITPEE KYKLCK++++ K +P+LV HD T+R+PD LIKVND+IQ
Sbjct: 112 IYGINRRFALHRITPEEVKYKLCKMRKIFVRAKGIPHLVIHDIHTVRHPDSLIKVNDTIQ 171
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
+D+ T KI +KF++GNLC++TGG WG
Sbjct: 172 IDLETGKI-TALKFDTGNLCLVTGGGNWG 199
Score = 59.3 bits (137), Expect = 9e-08
Identities = 27/55 (49%), Positives = 37/55 (67%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 666
G N GR+G I +RERHP SFD H+KD+ ++F+ +F+I KG K +ISLP
Sbjct: 194 GGGNWGRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNKPWISLP 244
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 115 bits (276), Expect = 1e-24
Identities = 53/84 (63%), Positives = 61/84 (72%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I++Q L+ VD R
Sbjct: 15 WMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMILRQGLVHVDNHPR 74
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D YPAGFMDVV I KT + FRL
Sbjct: 75 RDGKYPAGFMDVVEIPKTGDRFRL 98
Score = 81.0 bits (191), Expect = 3e-14
Identities = 38/89 (42%), Positives = 51/89 (57%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YDVKGRF + ++ EA+ KL KV + T VP VTHDG IRYPDP + D+I
Sbjct: 99 MYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRVPVAVTHDGHRIRYPDPHTSIGDTIV 158
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
++ K +D IK G ++TGG G
Sbjct: 159 YNVKEKKCVDLIKNRQGKAVIVTGGANRG 187
Score = 68.5 bits (160), Expect = 1e-10
Identities = 29/67 (43%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG-TKAYISLPRGKG 678
G N GR+G IV E HPG+F+I H+KD++G FATR N+F+IGK +++P+ +G
Sbjct: 182 GGANRGRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGKDLNNLQVTVPKQQG 241
Query: 679 IRLTIAE 699
+R+ + +
Sbjct: 242 LRMNVIQ 248
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 112 bits (270), Expect = 7e-24
Identities = 50/89 (56%), Positives = 66/89 (74%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD G F +HRIT +E+ +KLCKV RV+ G K +PY+VTHDGRTIR+P+ LIK NDSI
Sbjct: 102 LYDNVGHFFLHRITIKESMFKLCKVIRVSIGSKGIPYIVTHDGRTIRFPNLLIKSNDSIV 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
LD+ K++DFIKF G+LC++ G G
Sbjct: 162 LDLLNNKVIDFIKFSIGSLCVVIKGSNIG 190
Score = 104 bits (250), Expect = 2e-21
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E L I+K+ I VDGKVR
Sbjct: 18 WLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRESLNILKKNEIYVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D +PAG MDV+SI+ T E +R+
Sbjct: 78 ADKNFPAGVMDVISIKTTKENYRV 101
Score = 64.9 bits (151), Expect = 2e-09
Identities = 28/58 (48%), Positives = 42/58 (72%)
Frame = +1
Query: 511 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIR 684
N+GR+G ++ GS IV +KD G +F+T+ N+F+IGKGTK++ISLPR +G+R
Sbjct: 188 NIGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTKSFISLPRFRGLR 245
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 103 bits (248), Expect = 3e-21
Identities = 44/85 (51%), Positives = 59/85 (69%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD KGRF + ++ EEAKYKL KV A GP +PY+VTHD RTIR+P+P IK+ D+++
Sbjct: 214 LYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGPNQIPYIVTHDSRTIRFPNPEIKIGDTLK 273
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
D+ KI +F ESGN+C I G
Sbjct: 274 YDLVNNKIENFAHLESGNVCYIQQG 298
Score = 89.4 bits (212), Expect = 7e-17
Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +3
Query: 33 APRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV--KQRLIKVDGKVRTDPTYPAG 206
A RPS GPHKLRE LPL + L+ RL YAL G +V I+ K++ + VDGKVR D YP G
Sbjct: 138 ATRPSQGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGKVRRDKGYPTG 197
Query: 207 FMDVVSIEKTNELFRL 254
MDVV IEKT++ FR+
Sbjct: 198 LMDVVRIEKTDQSFRI 213
Score = 85.0 bits (201), Expect = 2e-15
Identities = 36/63 (57%), Positives = 48/63 (76%)
Frame = +1
Query: 511 NLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLT 690
N+GRVG I E+H GSFDI H+KD+ G+ FATRL N+F++G+G K++I LP G G+R T
Sbjct: 300 NIGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKKSWIELPSGDGVRET 359
Query: 691 IAE 699
I E
Sbjct: 360 ILE 362
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 91.1 bits (216), Expect = 2e-17
Identities = 42/84 (50%), Positives = 57/84 (67%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDK GG +A P++GPHK EC+PL + L+YA E+ I+ ++ IKV+G+VR
Sbjct: 18 WMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKELSIILAEKNIKVNGRVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
T+ +P G DVVSIEKT E FR+
Sbjct: 78 TNSHFPVGLFDVVSIEKTGEHFRV 101
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/72 (36%), Positives = 48/72 (66%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+Y+V +F +HRI+ EEA Y+L KV + + +PY+V+ G +IR+ DP I + +I+
Sbjct: 102 LYNVHKKFHLHRISSEEASYRLTKVTKKYEN-QGIPYIVSSCGLSIRFCDPAIDLGYTIK 160
Query: 434 LDIATTKIMDFI 469
+ T+K++++I
Sbjct: 161 ISNETSKVIEYI 172
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 81.0 bits (191), Expect = 3e-14
Identities = 38/80 (47%), Positives = 51/80 (63%)
Frame = +3
Query: 15 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 194
K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+ + +KVDG VR D
Sbjct: 18 KKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIISRGYVKVDGVVRRDYK 77
Query: 195 YPAGFMDVVSIEKTNELFRL 254
+P G MDV+ I T E++R+
Sbjct: 78 FPVGLMDVIEIVPTGEVYRV 97
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 77.4 bits (182), Expect = 3e-13
Identities = 37/82 (45%), Positives = 51/82 (62%)
Frame = +3
Query: 15 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 194
K GG +APRP GPH + +PL+I +R+ L YA E KI+ + I VDG VR +P
Sbjct: 26 KEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPK 85
Query: 195 YPAGFMDVVSIEKTNELFRLSM 260
+P G MDVV I +T + +R+ M
Sbjct: 86 FPVGIMDVVEIPRTGDRYRVVM 107
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/84 (39%), Positives = 49/84 (58%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W +++ G ++ +PS GPH +PL + LR+ YA T E I+ + +KVDGKVR
Sbjct: 13 WPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVR 72
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D YP G MDV+ + NE +R+
Sbjct: 73 RDYKYPVGLMDVIELTPINEYYRI 96
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 72.5 bits (170), Expect = 9e-12
Identities = 32/75 (42%), Positives = 46/75 (61%)
Frame = +3
Query: 30 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 209
+A +P GPH + LPL++ +RN L YA T E K++ + +VDG VR D +P GF
Sbjct: 28 WAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGF 87
Query: 210 MDVVSIEKTNELFRL 254
MDV+ + T E FR+
Sbjct: 88 MDVIEVVDTGEKFRM 102
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPG-SFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRG 672
G RN+GRVG + S ++ G +V ++D++G+ F T L+ VF+IG + ISLP G
Sbjct: 194 GGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250
Score = 35.5 bits (78), Expect = 1.3
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Frame = +2
Query: 257 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI--RYPDP------LI 412
Y VK F +H I EE K +++ T L HDGR I R DP +
Sbjct: 105 YPVKF-FKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVY 163
Query: 413 KVNDSIQLDIATTKIMDFIKFESGNLCMITGG 508
+ D++ + + +I IKF G + +I GG
Sbjct: 164 RTMDTLLITVPGQEIKGHIKFGEGAIAIIVGG 195
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 68.1 bits (159), Expect = 2e-10
Identities = 32/82 (39%), Positives = 49/82 (59%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W L + + RPS GPH + + LPL++ +R+ LKYA E KI++ I +DG R
Sbjct: 19 WQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKR 78
Query: 183 TDPTYPAGFMDVVSIEKTNELF 248
+ +PAG MDV+SI + +E +
Sbjct: 79 KEYKHPAGLMDVLSIPEMDETY 100
Score = 35.9 bits (79), Expect = 0.96
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKV--KRVATGPKNVPYLVTHDGRT--------IRYPD 403
++D GR ++ + ++ KLCK+ K V G N+ L HDGR + +
Sbjct: 103 LFDESGRISLKKT--DKTDVKLCKIVNKTVVKGG-NIQ-LNLHDGRNQIVKVSDAAKAEE 158
Query: 404 PLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGVTWGAWA 529
+ K DS+ + I I + F G L ITGG G +A
Sbjct: 159 DVYKTGDSVLISIPEQSIAGHVAFGEGKLAYITGGKHVGEFA 200
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 66.5 bits (155), Expect = 6e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + + V+ +PS GPH L +P+ I LR+ YA T E +I+ R+I+VDG+V
Sbjct: 21 WPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKTMKEARRILASRVIEVDGRVV 80
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD +P G MDV+ I + +R+
Sbjct: 81 TDYKFPVGLMDVLHIIPEEKYYRV 104
Score = 37.5 bits (83), Expect = 0.32
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Frame = +2
Query: 290 ITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTI-------RYPDPL-IKVNDSIQLDIA 445
I PEEA YKL +++R T HDGR + Y + K D++ + I
Sbjct: 117 IKPEEAGYKLAQIRRKMTVKNGDLQFTLHDGRNVLIRKGSEAYSTAISYKTYDALLITIP 176
Query: 446 TTKIMDFIKFESGNLCMITGG 508
I+ + FE G L ++ G
Sbjct: 177 RQSIVSHVPFEVGTLAIVVDG 197
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 63.3 bits (147), Expect = 6e-09
Identities = 28/84 (33%), Positives = 45/84 (53%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + + +PS G H + L L + +R+ LK A E +I+ + VDG+V
Sbjct: 19 WPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKRIINSGNVLVDGRVI 78
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D +P GFMD++ I KT E++R+
Sbjct: 79 KDYKFPVGFMDIIEIPKTGEVYRV 102
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 60.9 bits (141), Expect = 3e-08
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +3
Query: 39 RPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDV 218
R GPHK++E +PL I L+ LK T E +I+ + VDGKVR D YP G MDV
Sbjct: 25 RSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFDGKVLVDGKVRRDYKYPVGLMDV 84
Query: 219 VSIEKTNELFRL 254
V I + R+
Sbjct: 85 VEIPSADLRVRI 96
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 59.3 bits (137), Expect = 9e-08
Identities = 29/84 (34%), Positives = 44/84 (52%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + + + +P G H +PLV+ LR+ LK A +E+ KI+ + + VDGKVR
Sbjct: 15 WPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHEGKVLVDGKVR 74
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D Y G D +SI N +R+
Sbjct: 75 KDYRYTVGMFDTISIPAINANYRV 98
Score = 32.7 bits (71), Expect = 9.0
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+ + G+F H + +A K+CK+ L HDG T+ + K DS+
Sbjct: 99 VIGMDGKF--HLVPVTDASAKICKIVNKTALRGGKIQLNLHDGTTMIASNDY-KTKDSVI 155
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
L + KI + G+L M+T G
Sbjct: 156 LKMPERKIDQHFTYAVGSLVMVTEG 180
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 55.6 bits (128), Expect = 1e-06
Identities = 23/63 (36%), Positives = 39/63 (61%)
Frame = +3
Query: 42 PSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVV 221
P+ H + +P++I LR+ LK E+ +I+ ++KVDG++ D +P GFMDV+
Sbjct: 28 PTPATHSKEDSIPMLIALRDYLKLGDKEREITRILNNNMVKVDGRIVKDRRFPVGFMDVL 87
Query: 222 SIE 230
SI+
Sbjct: 88 SID 90
Score = 42.3 bits (95), Expect = 0.011
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKV-KRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSI 430
+YD KG+ I + P KL KV K+ G + L HDG+TI I +D +
Sbjct: 99 VYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIGTGKIQ-LGFHDGKTIVTDRKDINTSDVL 157
Query: 431 QLDIATTKIMDFIKFESGNLCMITGG 508
+ I +I + +K G+ ITGG
Sbjct: 158 LMKIPDLEIENVLKIAEGDKVFITGG 183
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 55.6 bits (128), Expect = 1e-06
Identities = 31/85 (36%), Positives = 41/85 (48%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+Y+ +G + + T E A KL KV+ P N L THDGRT D KV D
Sbjct: 96 VYNDQGALVLMKETKERASMKLLKVRSKVIAPGNRIQLGTHDGRTFITDDKSKKVGDVWA 155
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
+ + KI + IK + GN IT G
Sbjct: 156 VSVPDMKISEIIKMQPGNKAYITAG 180
Score = 47.2 bits (107), Expect = 4e-04
Identities = 22/66 (33%), Positives = 36/66 (54%)
Frame = +3
Query: 30 YAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGF 209
+ P P+ G H + + L+ +R+ LK + E +I+ L+KVDGK + + GF
Sbjct: 23 WGPTPNPGMHPKDQSVTLLSIIRDYLKLSDKEREAARILANGLVKVDGKTVREKKFAVGF 82
Query: 210 MDVVSI 227
MDV+ I
Sbjct: 83 MDVIEI 88
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/87 (32%), Positives = 45/87 (51%)
Frame = +2
Query: 269 GRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIAT 448
G+ T++ I E K+CKV ++ ++T D R ++ IKV DS+ +
Sbjct: 107 GKLTVYEINQNEKDLKICKVIKIINASSKNKIIITDDLRELKINYAKIKVEDSLLIKTIN 166
Query: 449 TKIMDFIKFESGNLCMITGGVTWGAWA 529
+I+ +KFE G+LC+IT G G A
Sbjct: 167 DEIVYALKFEVGSLCLITRGKHLGTIA 193
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/77 (25%), Positives = 37/77 (48%)
Frame = +3
Query: 24 GVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 203
G++ + S+GPH + + L+ ++ A E K+VK + V+GK +P
Sbjct: 25 GIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQEAQKVVKTGFLYVNGKKCLSHKFPI 84
Query: 204 GFMDVVSIEKTNELFRL 254
MD +S N+ +R+
Sbjct: 85 SLMDTISFPLANKHYRV 101
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 54.0 bits (124), Expect = 3e-06
Identities = 26/80 (32%), Positives = 43/80 (53%)
Frame = +3
Query: 15 KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPT 194
K G + +PS GPH +P+ ++LR+ L A EV ++ + VDG+ D
Sbjct: 23 KSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYLLNNGKVLVDGRPIKDYK 82
Query: 195 YPAGFMDVVSIEKTNELFRL 254
+P G DV++I + NE +R+
Sbjct: 83 FPVGLFDVLAIPEINEYYRV 102
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 53.2 bits (122), Expect = 6e-06
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + + G + GPH LPL + +R+ LK E +I+ + + VDG R
Sbjct: 13 WKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSEGKVLVDGISR 72
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
D +P G DV+++ NE +R+
Sbjct: 73 KDLRFPVGLFDVITLPLVNEAYRM 96
Score = 41.1 bits (92), Expect = 0.026
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+ D KGR ++++ KLC++ T L +DG I + DS+
Sbjct: 97 LQDEKGRLVLYKLNETNVN-KLCRINNKTTVKGGKIQLNLNDGTNILGSNDY-GTKDSLI 154
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
L I ++ +KFE GNL M+ GG
Sbjct: 155 LSIPDKHVVKHLKFEVGNLAMVIGG 179
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/86 (26%), Positives = 41/86 (47%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + K + GPH + +PL + LR+ L E +++ + + VDG R
Sbjct: 14 WQISKKSNKWITSTRPGPHNRLQSIPLAVILRDMLGVVDNRAEAKRVLSEGNVLVDGVAR 73
Query: 183 TDPTYPAGFMDVVSIEKTNELFRLSM 260
D +P G MD+++I N +R+ +
Sbjct: 74 KDLRFPVGLMDIITIPLNNVEYRVML 99
Score = 37.5 bits (83), Expect = 0.32
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +2
Query: 260 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 439
D K R ++++ A KLC+++ + + + +DG I + DSI L
Sbjct: 100 DGKSRLVLNKLDGTGAD-KLCRIEGKTSIKEGKIQMRLNDGVNIIGSNNY-NTKDSIILS 157
Query: 440 IATTKIMDFIKFESGNLCMITGG 508
+ K++ IK+E GNL MI GG
Sbjct: 158 VPDKKVVKHIKYEVGNLAMIVGG 180
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 50.0 bits (114), Expect = 6e-05
Identities = 23/75 (30%), Positives = 40/75 (53%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W L + ++ +P+ G H C+PL + LR+ L A E +++ R + VDG++
Sbjct: 15 WPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLATRQVLVDGRIE 74
Query: 183 TDPTYPAGFMDVVSI 227
TD G MDV+++
Sbjct: 75 TDLGRGVGLMDVLTV 89
Score = 39.9 bits (89), Expect = 0.059
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPD-PLIKVNDSI 430
I DV G+ I+ + A KLC+V +T + HDGR I D L D++
Sbjct: 97 ILDVNGKLRYRSISDKAAASKLCRVMGKSTITDGKTQIHLHDGRNILVSDAKLYDSGDTL 156
Query: 431 QLDIATTKIMDFIKFESGNLCMITGGVTWGAWAPSCPARDIPAPS 565
+ + + F G +TGG G A +RDI S
Sbjct: 157 VISLPDQSVAGHHPFSKGATAYLTGGSHIGITA-KVVSRDIKRSS 200
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 49.6 bits (113), Expect = 7e-05
Identities = 29/61 (47%), Positives = 35/61 (57%)
Frame = -3
Query: 693 DGEADALAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDGAHAPQ 514
DGE D LA +RD RL A D EHV + R + ++ GVL VHN EG + LA D A
Sbjct: 33 DGELDTLALGKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHPDATG 92
Query: 513 V 511
V
Sbjct: 93 V 93
Score = 39.1 bits (87), Expect = 0.10
Identities = 24/82 (29%), Positives = 41/82 (50%)
Frame = -2
Query: 499 DHTQVPGLKLDEVHNLRSCNV*LDGIVDFDKWVWIADGAAIMRYQVRNILRSGRHTLDFT 320
DH Q ++LD + +L +V +G+ D + + +GAA+++ R+ L
Sbjct: 98 DHAQSADVELDRIGDLVRRDVDHNGVTLLDHGIRVTNGAAVVQTDARHALVPELLAPHLA 157
Query: 319 QLVLSLLRGDTVDCESALNIID 254
QLVL D V ES+L ++D
Sbjct: 158 QLVLRFDSLDAVHNESSLGVVD 179
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/65 (35%), Positives = 35/65 (53%)
Frame = +3
Query: 51 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 230
G HK +PL+I LR+ LK E+ +I+ L+ VDGKV + GFMD +++
Sbjct: 30 GSHKKDSSIPLLIALRDYLKLGDKEREITRILTNSLVMVDGKVVKERRRGIGFMDTLTVS 89
Query: 231 KTNEL 245
+ L
Sbjct: 90 GNDYL 94
Score = 42.7 bits (96), Expect = 0.008
Identities = 29/84 (34%), Positives = 38/84 (45%)
Frame = +2
Query: 257 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQL 436
YD KG+ I E KL +VK + HDG T+ IK DS+ +
Sbjct: 97 YDRKGKLVILPKPGETKGLKLLRVKGKTYVKGGRIQISFHDGSTMVTDRKDIKNGDSVLV 156
Query: 437 DIATTKIMDFIKFESGNLCMITGG 508
I +I+D +KF GN ITGG
Sbjct: 157 KIPKKEIVDVLKFAPGNRVFITGG 180
>UniRef50_A0RVY5 Cluster: Ribosomal protein S4E; n=2;
Thermoprotei|Rep: Ribosomal protein S4E - Cenarchaeum
symbiosum
Length = 238
Score = 43.6 bits (98), Expect = 0.005
Identities = 23/84 (27%), Positives = 38/84 (45%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W + + G + G H +P + LR+ L T E K + ++VDG R
Sbjct: 19 WGITRKGKRFVVTVHPGAHSKHRSIPSAVLLRDTLGAVSTLREAKKSIYSGNVEVDGVKR 78
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
T + G MDVV + T +++R+
Sbjct: 79 TSLHHGIGLMDVVELGGTGDIYRM 102
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 43.2 bits (97), Expect = 0.006
Identities = 21/84 (25%), Positives = 41/84 (48%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
W +++ + + GPH +PL+I LR+ L YA E + + + ++GK
Sbjct: 14 WPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNEDNVLINGKAI 72
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
+D P G D+++ + E +R+
Sbjct: 73 SDEERPVGMFDILAFTEREEYYRV 96
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 39.9 bits (89), Expect = 0.059
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Frame = +2
Query: 260 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLD 439
DVKG I E AK +LCK++ T L G + D K DS+ +
Sbjct: 99 DVKGNLVAIEIPAESAKTRLCKIRNKTTVKGGKVQLNFAFGANV-LADNTYKAKDSVVVT 157
Query: 440 IATT-----KIMDFIKFESGNLCMITGG 508
+ T +I+D + GN+ MI GG
Sbjct: 158 LGTDGEDRFRIVDHFPYAEGNVAMIVGG 185
>UniRef50_UPI000038E364 Cluster: hypothetical protein Faci_03000514;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03000514 - Ferroplasma acidarmanus fer1
Length = 317
Score = 37.5 bits (83), Expect = 0.32
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -1
Query: 245 QFISLLN*DNIHKSSRISRVSPNFPIYLYEALFHNFQDFVSGQSILQTIPQENHQGQALA 66
Q I+ N +NI + I + N P E LFH F DFVSG ++ I + + + +A
Sbjct: 50 QVINTYNDENILEIINIPDIKYNIPDAEKEILFHKFIDFVSGNKLISGIMKIMYLDRKIA 109
Query: 65 QLV 57
Q +
Sbjct: 110 QFI 112
>UniRef50_Q2VZ09 Cluster: Predicted SAM-dependent methyltransferase;
n=4; Rhodospirillaceae|Rep: Predicted SAM-dependent
methyltransferase - Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264)
Length = 820
Score = 37.5 bits (83), Expect = 0.32
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +3
Query: 576 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
H+G TH R + RQGH+ V AA R GHP HHR G
Sbjct: 24 HRGDQETHDRIGPQLVPGTRQGHQAVDHAAPR-GHPQHHREG 64
>UniRef50_Q9KI83 Cluster: VrrB; n=9; Bacillus cereus group|Rep: VrrB
- Bacillus anthracis
Length = 115
Score = 37.5 bits (83), Expect = 0.32
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 516 GARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH----LAAARQGHP 683
G +GHH H HQG HG H H +Q+VH+ GH +H L QGH
Sbjct: 25 GHQGHHHHQGHHGHHGHH-HHQGHHGHHGHH--QQQVHH-HGHHHIHPQAILYQTHQGHQ 80
Query: 684 PHH 692
HH
Sbjct: 81 GHH 83
Score = 34.3 bits (75), Expect = 2.9
Identities = 19/42 (45%), Positives = 20/42 (47%)
Frame = +3
Query: 567 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
H HQG HG H H H+ QGH G H QGH HH
Sbjct: 17 HQGHQGHHG-HQGH------HHHQGHHGHHGHHHHQGHHGHH 51
>UniRef50_A7ATI1 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 546
Score = 37.5 bits (83), Expect = 0.32
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = +3
Query: 609 EVEQRVHNRQ---GHEGVHLAAARQGHPPHHRRG 701
E Q+VH R+ G E +HL + HPPHHR+G
Sbjct: 441 EYVQKVHEREMKSGEEAIHLPNSGTHHPPHHRKG 474
>UniRef50_A5KAS9 Cluster: Tryptophan-rich antigen; n=3; cellular
organisms|Rep: Tryptophan-rich antigen - Plasmodium
vivax
Length = 2662
Score = 35.9 bits (79), Expect = 0.96
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +3
Query: 522 RGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHE-GVHLAAARQG--HPPH- 689
RG H P + + H H G H +H ++ VH Q H+ GVH A Q HP H
Sbjct: 376 RGVH--PEQAHQKGVHPKHAHQKGVHPKHAHQKGVHPEQAHQRGVHPEQAHQKGVHPKHA 433
Query: 690 HRRG 701
H+RG
Sbjct: 434 HQRG 437
>UniRef50_A0BHK0 Cluster: Chromosome undetermined scaffold_108,
whole genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_108,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 246
Score = 35.9 bits (79), Expect = 0.96
Identities = 23/70 (32%), Positives = 38/70 (54%)
Frame = +3
Query: 45 STGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVS 224
+T P +L + + L + ++ K L E L I KQ+ +KV+ K + DPT+P D S
Sbjct: 100 NTQPRELLKVVNLDPKIMDKEKKKL--EEELDINKQQKVKVEHKKQLDPTFPRNDFDKFS 157
Query: 225 IEKTNELFRL 254
IE +++ L
Sbjct: 158 IEDMDQVLNL 167
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 35.1 bits (77), Expect = 1.7
Identities = 26/66 (39%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = -2
Query: 685 GGCP--CRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRWC 527
GGC C C CR R RRC PWSP CAQ C + RDV +G C
Sbjct: 128 GGCEHDCVQLTANQHQCRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDV-QGAARC 185
Query: 526 PRAPSY 509
P Y
Sbjct: 186 ECRPGY 191
>UniRef50_Q9KI91 Cluster: VrrB; n=17; Bacteria|Rep: VrrB - Bacillus
anthracis
Length = 265
Score = 35.1 bits (77), Expect = 1.7
Identities = 20/61 (32%), Positives = 24/61 (39%)
Frame = +3
Query: 516 GARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 695
G GHH H HQG HG H H + GH+G H GH HH+
Sbjct: 112 GHHGHHHHQGHHGHHGHH-HHQGHHGHHGHHHHQ----GHHGHQGHHHHQGHHGHHGHHQ 166
Query: 696 R 698
+
Sbjct: 167 Q 167
Score = 33.1 bits (72), Expect = 6.8
Identities = 18/59 (30%), Positives = 20/59 (33%)
Frame = +3
Query: 516 GARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
G +GHH H HG H H QGH+G H GH HH
Sbjct: 148 GHQGHHHHQGHHGHHGHHQQQVHHHGHHHIHPQAILYQTHQGHQGHHDHHGHHGHQGHH 206
>UniRef50_Q3W3I5 Cluster: Putative uncharacterized protein; n=1;
Frankia sp. EAN1pec|Rep: Putative uncharacterized
protein - Frankia sp. EAN1pec
Length = 188
Score = 35.1 bits (77), Expect = 1.7
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +2
Query: 425 SIQLDIATTKIMDFIKF-----ESGNLCMITGGVTWGAW-APSCPARDIPAPSTLCTSRT 586
S +LD T + DF + +S + T W AW A CP R +P+P+T T+ T
Sbjct: 113 SPELDALATHVADFARMLTKLEDSASTPGSTAWTAWTAWTATPCP-RSLPSPATCATTTT 171
Query: 587 PRDTPS 604
P S
Sbjct: 172 PSSLDS 177
>UniRef50_Q8BY81 Cluster: 3 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A630024D08
product:hypothetical Histidine-rich region containing
protein, full insert sequence; n=1; Mus musculus|Rep: 3
days neonate thymus cDNA, RIKEN full-length enriched
library, clone:A630024D08 product:hypothetical
Histidine-rich region containing protein, full insert
sequence - Mus musculus (Mouse)
Length = 139
Score = 33.9 bits (74), Expect = 3.9
Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +3
Query: 528 HHRVPRETSR-LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
HH R LLR + G H RH +R H RQ EGV R+GHP HH
Sbjct: 57 HHLSADPAERVLLRGVSPPGEALGHQRHY--ERQHVRQHVEGVGQHGERRGHPAHH 110
>UniRef50_A6WAT7 Cluster: Putative uncharacterized protein; n=1;
Kineococcus radiotolerans SRS30216|Rep: Putative
uncharacterized protein - Kineococcus radiotolerans
SRS30216
Length = 189
Score = 33.9 bits (74), Expect = 3.9
Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = -2
Query: 700 PRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRCVPWSP*CAQC-RRSRDVSRGTRWCP 524
P R CP R ARC CP R RC RC P A+C + RW P
Sbjct: 12 PARCPARCPARCPARCPARCPARCPARCPA---RCPARCP--ARCPAHCPNNGAARRWRP 66
Query: 523 RAPSYASR 500
A + +R
Sbjct: 67 AAAARRAR 74
>UniRef50_UPI0000D5573E Cluster: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1);
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
Tyrosine-protein phosphatase non-receptor type 13
(Protein-tyrosine phosphatase 1E) (PTP-E1) (hPTPE1)
(PTP-BAS) (Protein-tyrosine phosphatase PTPL1)
(Fas-associated protein-tyrosine phosphatase 1) (FAP-1)
- Tribolium castaneum
Length = 768
Score = 33.5 bits (73), Expect = 5.1
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +2
Query: 365 LVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGV 511
+ DGR ++ D +IKVND ++TT+I+D ++ G +C++ +
Sbjct: 708 VAARDGR-LKPGDRVIKVNDESVEHLSTTEIIDLLRIVRGPVCIVVSRI 755
>UniRef50_UPI00006A1FE8 Cluster: Coiled-coil domain-containing protein
35; n=1; Xenopus tropicalis|Rep: Coiled-coil
domain-containing protein 35 - Xenopus tropicalis
Length = 957
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +3
Query: 558 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 698
LLRHC + T L++ Q V +++ HE + Q + PHH R
Sbjct: 893 LLRHCGPEASSETELQNTGPQVVASQKTHEKLDNLPTDQANTPHHHR 939
>UniRef50_UPI00006614B8 Cluster: Homolog of Homo sapiens
"Keratin-associated protein 10-4; n=1; Takifugu
rubripes|Rep: Homolog of Homo sapiens
"Keratin-associated protein 10-4 - Takifugu rubripes
Length = 353
Score = 33.5 bits (73), Expect = 5.1
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Frame = -2
Query: 679 CPCRAAARCTPSCPCRL*TRCSTS-WRRCVPWSP*CAQCRRSRDVSRGTRWCP---RAPS 512
C C + RC SC C C TS W W P C S WCP R P+
Sbjct: 29 CRCPTSCRCPTSCWCPTYCWCPTSCWCPTYCWCPTSCWCPTSCRCPTSC-WCPTYCRCPT 87
Query: 511 Y 509
Y
Sbjct: 88 Y 88
>UniRef50_Q2CHG7 Cluster: Parallel beta-helix repeat protein; n=4;
cellular organisms|Rep: Parallel beta-helix repeat
protein - Oceanicola granulosus HTCC2516
Length = 3143
Score = 33.5 bits (73), Expect = 5.1
Identities = 23/60 (38%), Positives = 26/60 (43%)
Frame = +3
Query: 522 RGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
RGH R R R LR A G RH +R +R+ H G L A G P RRG
Sbjct: 2986 RGHRR-RRGGDRELRRLARLLAEGRRHRHRA-RRHRDREDHRGAGLGARSGGRPDGARRG 3043
>UniRef50_Q0DW21 Cluster: Os03g0101400 protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Os03g0101400 protein -
Oryza sativa subsp. japonica (Rice)
Length = 361
Score = 33.5 bits (73), Expect = 5.1
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +3
Query: 567 HCAHQGLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRR 698
H HQ LH +H + Q VH+R H R+ HP HHRR
Sbjct: 128 HLRHQHLHPSHQQQPPPPQPVHHRHRHH----VRRRRAHPRHHRR 168
>UniRef50_A7TPB7 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 228
Score = 33.5 bits (73), Expect = 5.1
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Frame = +3
Query: 528 HHRV-PRETSRLLRHCAHQGLHGTH-LRHEVEQRVH-NRQGHEGVHLAAARQGHPPHHRR 698
HH + P + + L H HQ LH TH L H + Q + Q H +H PHH R
Sbjct: 95 HHTLQPPQVTVQLHHHIHQHLHHTHQLHHHIHQLLQVIVQHHHPIHQHHHHTHQHPHHIR 154
>UniRef50_A5WHY9 Cluster: TonB-dependent receptor; n=1;
Psychrobacter sp. PRwf-1|Rep: TonB-dependent receptor -
Psychrobacter sp. PRwf-1
Length = 836
Score = 33.1 bits (72), Expect = 6.8
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 531 HRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 689
HR+ R T L H H H H+ E+ H GHE GH H
Sbjct: 314 HRINRLTCGLDEHEHGAHEHHDHEEHDHEEHEHEEHGHEAHEHGHEEHGHQEH 366
>UniRef50_A0TIV4 Cluster: Putative uncharacterized protein; n=2;
Burkholderia cepacia complex|Rep: Putative
uncharacterized protein - Burkholderia ambifaria MC40-6
Length = 597
Score = 33.1 bits (72), Expect = 6.8
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 519 ARGHH---RVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPH 689
ARG H VPR+ SR L A + G + H+V+ R G EG A A G P
Sbjct: 518 ARGRHPEAHVPRQASRHLHEAA--AVPGDQVLHQVDAFAE-RHGGEGA--ADADDGRPDQ 572
Query: 690 HRRG 701
HR G
Sbjct: 573 HRMG 576
>UniRef50_Q8SZT1 Cluster: GH27708p; n=18; Eumetazoa|Rep: GH27708p -
Drosophila melanogaster (Fruit fly)
Length = 647
Score = 32.7 bits (71), Expect = 9.0
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +3
Query: 528 HHRVPRETSRLLRHCAH-QGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHP--PHH 692
HH+ ++ + +H H Q H H +H ++Q+ +Q H GHP PHH
Sbjct: 123 HHQQQQQHQQQQQHQQHLQQHHQAHHQHVLQQQQQQQQQHSQHQHQQQHHGHPLHPHH 180
>UniRef50_Q5UP36 Cluster: Cysteinyl-tRNA synthetase; n=1;
Acanthamoeba polyphaga mimivirus|Rep: Cysteinyl-tRNA
synthetase - Mimivirus
Length = 509
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/54 (25%), Positives = 32/54 (59%)
Frame = +3
Query: 6 MLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKV 167
+LDKLG +Y S+ HK+++ + ++I R++L+ ++ +K++L +
Sbjct: 421 LLDKLGFIYRVGNSSSSHKIKDLMNILIETRSQLRQLTRNPDLSPGIKKQLFDI 474
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 802,933,075
Number of Sequences: 1657284
Number of extensions: 18040684
Number of successful extensions: 62002
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 57859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61821
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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