Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0885
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   143   2e-35
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   142   6e-35
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   141   8e-35
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    31   0.21 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    27   3.4  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    27   3.4  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    26   4.5  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   6.0  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.9  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   7.9  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  143 bits (346), Expect = 2e-35
 Identities = 63/84 (75%), Positives = 71/84 (84%)
 Frame = +3

Query: 3   WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
           W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLIKVDGKVR
Sbjct: 18  WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVR 77

Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
           TD T+P GFMDV+S+EKT E FRL
Sbjct: 78  TDSTFPTGFMDVISVEKTGEHFRL 101



 Score =  139 bits (337), Expect = 3e-34
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +2

Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
           +YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIK 161

Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
           L++ T KI  FIKF++    M+TGG   G
Sbjct: 162 LNLETNKIESFIKFDTSAQVMVTGGRNMG 190



 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 41/66 (62%), Positives = 55/66 (83%)
 Frame = +1

Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
           G RN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244

Query: 682 RLTIAE 699
           +L+I E
Sbjct: 245 KLSITE 250


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  142 bits (343), Expect = 6e-35
 Identities = 62/84 (73%), Positives = 71/84 (84%)
 Frame = +3

Query: 3   WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
           W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLIKVDGKVR
Sbjct: 18  WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIKVDGKVR 77

Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
           TD T+P GFMDV+S++KT E FRL
Sbjct: 78  TDSTFPTGFMDVISVDKTGEHFRL 101



 Score =  139 bits (337), Expect = 3e-34
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +2

Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
           +YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIK 161

Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
           L++ T KI  FIKF++    M+TGG   G
Sbjct: 162 LNLETNKIESFIKFDTSAQVMVTGGRNMG 190



 Score = 95.1 bits (226), Expect = 9e-21
 Identities = 41/66 (62%), Positives = 55/66 (83%)
 Frame = +1

Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
           G RN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGV 244

Query: 682 RLTIAE 699
           +L+I E
Sbjct: 245 KLSITE 250


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  141 bits (342), Expect = 8e-35
 Identities = 62/84 (73%), Positives = 71/84 (84%)
 Frame = +3

Query: 3   WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
           W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G EV  I+ QRLI+VDGKVR
Sbjct: 18  WLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGREVKAILMQRLIQVDGKVR 77

Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
           TD T+P GFMDV+S+EKT E FRL
Sbjct: 78  TDSTFPTGFMDVISVEKTGEHFRL 101



 Score =  139 bits (337), Expect = 3e-34
 Identities = 62/89 (69%), Positives = 73/89 (82%)
 Frame = +2

Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
           +YD+KGRFT+HRIT EEAKYKLCKVKRV  G K VP+LVTHDGRTIRYPDPLIKVND+I+
Sbjct: 102 VYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIK 161

Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
           L++ T KI  FIKF++    M+TGG   G
Sbjct: 162 LNLETNKIESFIKFDTSAQVMVTGGRNMG 190



 Score = 95.9 bits (228), Expect = 5e-21
 Identities = 41/66 (62%), Positives = 55/66 (83%)
 Frame = +1

Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
           G RN+GRVGTIV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K++ISLP+GKG+
Sbjct: 185 GGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGV 244

Query: 682 RLTIAE 699
           +L+I E
Sbjct: 245 KLSITE 250


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
 Frame = -3

Query: 657  DVRLRALAD-----YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHD-GAHAPQVTP-PV 499
            + RLR+L +     Y  V+ P  EG     LD+H+   A ++L GH+ G     +T    
Sbjct: 887  EARLRSLFESYGKLYRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGRLLHITTVNE 946

Query: 498  IIHKFPDS 475
            ++H  P S
Sbjct: 947  MMHNVPSS 954


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 412 QSQRFHPVRHCNYED 456
           ++++ HPVRH  YED
Sbjct: 5   ENEKIHPVRHSKYED 19


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 206 SSRISRVSPNFPI--YLYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 51
           SS+   + P+ P+    +E  F  NFQ      S L  IP++   G ++A+++GT
Sbjct: 27  SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -1

Query: 167 YLYEALFHNFQDFV 126
           Y+Y  LFH+FQD+V
Sbjct: 113 YVYSPLFHSFQDWV 126


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = +2

Query: 506 GVTWGAWAPSCPARDIPA-PSTLCT 577
           G+ W +W       D+PA P T CT
Sbjct: 211 GIIWKSWKKPITLTDVPALPDTECT 235


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -2

Query: 400  WIADGAAIMRYQVRNILRSG-RHTLDFTQL-VLSLLRGDTVDCESALNIIDRRN 245
            WI + +  + YQV+N+L S     +DF  L V+ L R   V+  + +   DR N
Sbjct: 887  WIQNSSKAIPYQVKNLLESYLADFVDFDDLEVVELGRSLAVELGTRIVSSDRDN 940


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 487 LVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTG 594
           L+ D  +  +GR G++ S E H    DI+ +  S G
Sbjct: 248 LIIDEAQTGIGRTGSMFSFEHHGIVPDILTLSKSLG 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,172,577
Number of Sequences: 5004
Number of extensions: 68790
Number of successful extensions: 224
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 224
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)