Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0885
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 157 6e-39
SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0) 31 1.2
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41) 30 1.6
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24) 29 2.8
SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_11242| Best HMM Match : MAM (HMM E-Value=0) 29 4.8
SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5) 28 6.4
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8) 28 8.4
SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18) 28 8.4
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 157 bits (382), Expect = 6e-39
Identities = 72/84 (85%), Positives = 77/84 (91%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQRLIK+DGKVR
Sbjct: 442 WMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQRLIKIDGKVR 501
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDVV+I+KT E FRL
Sbjct: 502 TDTTYPAGFMDVVTIDKTGENFRL 525
Score = 133 bits (321), Expect = 2e-31
Identities = 57/89 (64%), Positives = 72/89 (80%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YDVKGRF +HRIT EEAKYKL +V+RV G K VPY+VTHD RTIRYPDP IKVND++
Sbjct: 526 LYDVKGRFAVHRITAEEAKYKLGRVRRVDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVV 585
Query: 434 LDIATTKIMDFIKFESGNLCMITGGVTWG 520
+DI T K++D+IKF++GN+ M+ GG G
Sbjct: 586 IDIKTGKVIDYIKFDTGNMAMVVGGRNMG 614
Score = 111 bits (266), Expect = 7e-25
Identities = 46/66 (69%), Positives = 57/66 (86%)
Frame = +1
Query: 502 GRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKGI 681
G RN+GRVG + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG+
Sbjct: 609 GGRNMGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKGV 668
Query: 682 RLTIAE 699
RL+IAE
Sbjct: 669 RLSIAE 674
>SB_58993| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 541
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 491 CMITGGVTWGAWAPSCPARDIPAPSTLCT 577
C T G WG CPA+D A + LC+
Sbjct: 422 CCCTAGKAWGISCELCPAKDTRAYNELCS 450
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/69 (21%), Positives = 38/69 (55%)
Frame = +3
Query: 108 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLSMMLRADSQST 287
+Y L ++ + + L++ G + P+YP+ ++ ++ +N+LF + + + + T
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFN-TFIESSTRKRT 654
Query: 288 VSPLRRLST 314
VS R+L++
Sbjct: 655 VSVNRQLTS 663
>SB_8051| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -2
Query: 592 PWSP*CAQCRRSRDVSRGTRWCPRAPSYASRDHTQVPGLK 473
PW P +Q R + + GT+ P PS+ RDH G+K
Sbjct: 311 PWGP--SQNPRDQATTLGTKPQPSGPSHNPRDHATTLGIK 348
>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
Length = 482
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/72 (23%), Positives = 35/72 (48%)
Frame = +2
Query: 281 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 460
I +TP+ K C+V R++TGP +++ +G + +++ ++ + + +
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345
Query: 461 DFIKFESGNLCM 496
F FE G CM
Sbjct: 346 -FPDFEKGVACM 356
>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 561 GAGMSLAGHDGAHAPQVTPPVIIHKFPDSNL 469
G S GH G++ PQ + V+I FP +NL
Sbjct: 233 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 263
>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
Length = 565
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 561 GAGMSLAGHDGAHAPQVTPPVIIHKFPDSNL 469
G S GH G++ PQ + V+I FP +NL
Sbjct: 380 GIFSSEGGHSGSYFPQSSGKVVIRSFPVTNL 410
>SB_16363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 709
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -1
Query: 596 CPVESLMCTMS-KEPGCLSRDTMVPTRPKLRLP 501
C ++ +CT+ KEPG DT PTR K +LP
Sbjct: 556 CTADNDLCTVCCKEPG--KDDTCTPTRDKTQLP 586
>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
Length = 348
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
Frame = +2
Query: 95 EES--SEVCFDRKRSPENCE 148
EES +E+C DRKR P++CE
Sbjct: 76 EESRYNELCHDRKRGPDDCE 95
>SB_257| Best HMM Match : Tetraspannin (HMM E-Value=1.5)
Length = 237
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +3
Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRR 698
HH P +LRH H+ + H RH H+R H H H P+H R
Sbjct: 175 HHHHPSTIIIILRH-RHRQHYNRHRRHHH----HHRHRHHHHHPNHPYSHHYPNHHR 226
>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 141
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Frame = -2
Query: 172 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 56
PS++ F +FRT FP + RF R+ IT ++LW
Sbjct: 84 PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128
>SB_38698| Best HMM Match : MiaE (HMM E-Value=5.8)
Length = 284
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 494 MITGGVTWGAWAPSCP-ARDIPAPSTLCTSRTPRDTPSP 607
++ GV W +W P C R P ++ R PR TP P
Sbjct: 113 LLRDGVEW-SWLPECDHLRSPPDVASTPVRRYPRRTPKP 150
>SB_20073| Best HMM Match : F5_F8_type_C (HMM E-Value=2.9e-18)
Length = 593
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 541 GTRWCPRAPSYASRDHTQVPGLKLDEVHNLRSCNV*LDGIVDFDKWV 401
G +WCPR D + P L++D C+V +DG D++V
Sbjct: 403 GQKWCPR-------DGDRTPWLQIDMNELYYICSVRVDGYTPLDQYV 442
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,480,742
Number of Sequences: 59808
Number of extensions: 595178
Number of successful extensions: 2063
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2059
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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