Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0885
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   127   7e-30
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    39   0.004
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    31   0.80 
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.6  
Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical pr...    27   9.8  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinosit...    27   9.8  
AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinosit...    27   9.8  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  127 bits (307), Expect = 7e-30
 Identities = 58/84 (69%), Positives = 69/84 (82%)
 Frame = +3

Query: 3   WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
           WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR+++VDGKVR
Sbjct: 17  WMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVR 76

Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
           T   +P GFMDVV+IE+TNE FR+
Sbjct: 77  TCHKFPTGFMDVVAIERTNEYFRM 100



 Score =  114 bits (275), Expect = 5e-26
 Identities = 52/85 (61%), Positives = 62/85 (72%)
 Frame = +2

Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
           +YD KGR+ +HRI   EA +KLCKVK V T  K VP L T DGRTIRYPDP +KVND+I 
Sbjct: 101 LYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIV 160

Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
            +I+T KI D +KFE GNL  +TGG
Sbjct: 161 FNISTQKITDSVKFEPGNLAYVTGG 185



 Score =  103 bits (247), Expect = 1e-22
 Identities = 48/71 (67%), Positives = 57/71 (80%)
 Frame = +1

Query: 487 LVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLP 666
           L Y  G RN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLP 238

Query: 667 RGKGIRLTIAE 699
            G GIRL+IAE
Sbjct: 239 TGAGIRLSIAE 249


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 692
           HH    E      H  H G HGTH  H          GH G  H A A  GH  HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580



 Score = 36.3 bits (80), Expect = 0.021
 Identities = 21/59 (35%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
 Frame = +3

Query: 519 ARGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 692
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH   H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEH 522



 Score = 35.5 bits (78), Expect = 0.037
 Identities = 20/55 (36%), Positives = 22/55 (40%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
           HHR   E        AH G HGTH  H  E   H+   H G H +     H P H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAH 454



 Score = 33.9 bits (74), Expect = 0.11
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
 Frame = +3

Query: 516 GARGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAARQGHPP 686
           G+ G H     T   L H  H G HGTH    H      H+   HE G H  A    H  
Sbjct: 649 GSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAHHGHHDD 708

Query: 687 ---HHRRG 701
              HH  G
Sbjct: 709 KENHHHHG 716



 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = +3

Query: 567 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHH 692
           H AH   HG H RH  E    H+   H G H      GH   H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGHHGEH 432



 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQR----VHNRQGHEGVHLAAARQGHPPHH 692
           HH    E      H  H G HGTH  H  E       H   G  G H       H P H
Sbjct: 502 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAH 560



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/57 (33%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
 Frame = +3

Query: 525 GHHRVPRETSRLLRHCAHQGLHGTHL-RHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
           GHH           H  H G HG H   H      H+  GH G H       H PHH
Sbjct: 588 GHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH--GHHGAH-----HHHAPHH 637



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/55 (29%), Positives = 16/55 (29%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
           HH  P           H G HG H  H          GH G H       H P H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH 685



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 3/58 (5%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRV---HNRQGHEGVHLAAARQGHPPHH 692
           HH  P        H +H   HG H  H         H   G  GVH      G+  HH
Sbjct: 567 HHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHH 624



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 525 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 656
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/55 (34%), Positives = 20/55 (36%)
 Frame = +3

Query: 528 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
           HH    E      H  H G HG+H  H      H   GH   H A A  GH   H
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGH---HESHGHG--HHAPAHHGHHGEH 609



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = +3

Query: 573 AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
           AH G HG H  H      H   GH G H      GH   H  G
Sbjct: 559 AHHGHHGEH--HHAPAH-HGHHGHHGSH--GVHHGHHESHGHG 596



 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
 Frame = +3

Query: 573 AHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHH 692
           AH G HG H  H      H   G  H G H       H  HH
Sbjct: 622 AHHGHHGAHHHHAPHHEHHEHHGDHHHGSH-GVHHGHHGTHH 662


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/44 (38%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
 Frame = +3

Query: 567 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHH 692
           HC   G HG H       R H   G  G      R GH  PPHH
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHH 402



 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +3

Query: 567 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 692
           HC    G HG    H  + R  +R GH   H    R   PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +2

Query: 269 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 400
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 679 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 590
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 426  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 262
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


>Z69885-4|CAA93757.1|  208|Caenorhabditis elegans Hypothetical
           protein T04C10.4 protein.
          Length = 208

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 385 HHPLSRPTYQSQRFHPVRHCNYEDYGLH 468
           HH    PTY    F+P  H +Y+ + L+
Sbjct: 32  HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/42 (28%), Positives = 16/42 (38%)
 Frame = +3

Query: 576 HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
           H G   TH  H+      +  GH G H  +  + H  H   G
Sbjct: 43  HHGHMDTHHHHDSHHHGGHHGGHHGGHYESHYESHHHHGHHG 84


>AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinositide
           3-kinase adaptersubunit protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 674 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 558
           L  G+EM    P  +   L ++  K  P + LMC  SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338


>AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinositide
           kinase adaptersubunit protein 1 protein.
          Length = 522

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -1

Query: 674 LPRGSEMYAFVPLPIMNTLFNLVAKVCPVESLMCTMSKE 558
           L  G+EM    P  +   L ++  K  P + LMC  SKE
Sbjct: 300 LDAGAEMINSEPTKVTQLLVDMELKWTPAQYLMCGTSKE 338


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,656
Number of Sequences: 27780
Number of extensions: 414651
Number of successful extensions: 1421
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)