Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0885
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.70 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.2  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.9  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   6.5  

>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 545 RDIPAPSTLCTSRTPRDTPSP 607
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
 Frame = +3

Query: 576 HQGLHGT-HLRHEVEQRVHNRQGHEGVHL---AAARQGHPPHH 692
           H  +H T H  H      H++      H    AA + GH PHH
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHH 465


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 307 SLLRGDTVDCESALNIIDRRNSSLV 233
           SLL+ +TV C+ A++++   +S L+
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLL 405


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 545 RDIPAPSTLCTSRTPRDTPSP 607
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 579 DVHNVEGAGMSLAGHD 532
           DVH V GAG  +  HD
Sbjct: 110 DVHGVIGAGHWIGDHD 125


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 102 RLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPA 203
           R K+ LTG   L   K RL+  +      P +P+
Sbjct: 182 RTKHRLTGETRLSATKGRLVITEPVGSVRPKFPS 215



 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/42 (23%), Positives = 14/42 (33%)
 Frame = +3

Query: 576  HQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
            H G  G  + H      H+R G + +     R    P    G
Sbjct: 1755 HSGTMGPPVGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGG 1796


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 112 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 11
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 301 LRGDTVDCESALNIIDRRNSSLVFSIE 221
           + G+T  C S + + D +NS L+  ++
Sbjct: 143 ISGETSVCPSQIVVFDLKNSKLLKQVK 169


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 556 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 669
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = +1

Query: 556 GSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPR 669
           G F  VH+   T   F T    +  + +  + YI L R
Sbjct: 271 GDFQPVHVHKQTAIAFRTPTYRMQQVEQPVQVYIQLKR 308


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,849
Number of Sequences: 438
Number of extensions: 5027
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)