Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0885
(701 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 142 2e-34
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 142 2e-34
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 142 2e-34
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 31 0.74
At1g29760.1 68414.m03639 expressed protein 31 0.74
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 30 1.3
At1g15780.1 68414.m01893 expressed protein 30 1.3
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.3
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.0
At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase, ... 29 3.0
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.0
At4g08180.3 68417.m01353 oxysterol-binding family protein simila... 28 5.2
At4g08180.2 68417.m01352 oxysterol-binding family protein simila... 28 5.2
At4g08180.1 68417.m01351 oxysterol-binding family protein simila... 28 5.2
At4g00165.1 68417.m00017 protease inhibitor/seed storage/lipid t... 28 5.2
At3g06990.1 68416.m00830 DC1 domain-containing protein contains ... 28 5.2
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse... 28 5.2
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 28 6.9
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 6.9
At2g40760.1 68415.m05028 rhodanese-like domain-containing protei... 28 6.9
At2g26730.1 68415.m03206 leucine-rich repeat transmembrane prote... 28 6.9
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 9.1
At5g22355.1 68418.m02608 DC1 domain-containing protein contains ... 27 9.1
At4g01740.1 68417.m00226 DC1 domain-containing protein similar t... 27 9.1
At3g07000.1 68416.m00831 DC1 domain-containing protein contains ... 27 9.1
At1g62730.1 68414.m07080 expressed protein 27 9.1
At1g26797.1 68414.m03263 self-incompatibility protein-related si... 27 9.1
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 142 bits (344), Expect = 2e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVR
Sbjct: 18 WMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDVVSI KTNE FRL
Sbjct: 78 TDKTYPAGFMDVVSIPKTNENFRL 101
Score = 124 bits (300), Expect = 4e-29
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+
Sbjct: 102 LYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIK 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
LD+ KI++FIKF+ GN+ M+TGG
Sbjct: 162 LDLEANKIVEFIKFDVGNVVMVTGG 186
Score = 103 bits (246), Expect = 2e-22
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 478 VRELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 657
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 658 SLPRGKGIRLTIAE 699
SLP+GKGI+LTI E
Sbjct: 237 SLPKGKGIKLTIIE 250
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 142 bits (344), Expect = 2e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVR
Sbjct: 18 WMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDVVSI KTNE FRL
Sbjct: 78 TDKTYPAGFMDVVSIPKTNENFRL 101
Score = 124 bits (299), Expect = 6e-29
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+
Sbjct: 102 LYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIK 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
LD+ KI++FIKF+ GN+ M+TGG
Sbjct: 162 LDLEENKIVEFIKFDVGNVVMVTGG 186
Score = 103 bits (246), Expect = 2e-22
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 478 VRELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 657
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 658 SLPRGKGIRLTIAE 699
SLP+GKGI+LTI E
Sbjct: 237 SLPKGKGIKLTIIE 250
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 142 bits (344), Expect = 2e-34
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVR 182
WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT EV+ I+ QR I+VDGKVR
Sbjct: 18 WMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVR 77
Query: 183 TDPTYPAGFMDVVSIEKTNELFRL 254
TD TYPAGFMDVVSI KTNE FRL
Sbjct: 78 TDKTYPAGFMDVVSIPKTNENFRL 101
Score = 124 bits (299), Expect = 6e-29
Identities = 53/85 (62%), Positives = 68/85 (80%)
Frame = +2
Query: 254 IYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQ 433
+YD KGRF +H I EEAK+KLCKV+ + G K +PYL T+DGRTIRYPDPLIK ND+I+
Sbjct: 102 LYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIK 161
Query: 434 LDIATTKIMDFIKFESGNLCMITGG 508
LD+ KI++FIKF+ GN+ M+TGG
Sbjct: 162 LDLEENKIVEFIKFDVGNVVMVTGG 186
Score = 103 bits (246), Expect = 2e-22
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 478 VRELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYI 657
V +V G RN GRVG I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK ++
Sbjct: 177 VGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWV 236
Query: 658 SLPRGKGIRLTIAE 699
SLP+GKGI+LTI E
Sbjct: 237 SLPKGKGIKLTIIE 250
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 31.1 bits (67), Expect = 0.74
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +1
Query: 478 VRELVYDHGRRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFAT 609
VRE++ D GRR G + + R + DI+HIK +TF T
Sbjct: 166 VREVIEDEGRRTAG-IFSHFQRPNLETNADIIHIKMLRNNTFVT 208
>At1g29760.1 68414.m03639 expressed protein
Length = 526
Score = 31.1 bits (67), Expect = 0.74
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 187 SVLTFPSTFMRRCFTIFRTSFPVKAYFRRFL 95
S+LTFP +R CF F F + RRFL
Sbjct: 195 SLLTFPPWLLRNCFLFFFDPFSTIRFGRRFL 225
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 76 KHSRNLWGPVDGLGAYTPPSLSNI 5
KHS +LWG D L TPP+ ++
Sbjct: 44 KHSADLWGSADALAIATPPASDDL 67
>At1g15780.1 68414.m01893 expressed protein
Length = 1335
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 675 LAARQRDVRLRALADYEHVVQPRGEGVSRGVLDVHNVEG 559
L ARQ+ +L+ + D + +G VSRG+ H+++G
Sbjct: 865 LQARQQAAQLQQMNDMNDLTSRQGMNVSRGMFQQHSMQG 903
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 641 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 546
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 641 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 546
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At2g38050.1 68415.m04671 3-oxo-5-alpha-steroid 4-dehydrogenase,
putative / steroid 5-alpha-reductase, putative identical
to gi:1280611; contains a steroid 5-alpha reductase,
C-terminal domain
Length = 262
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -2
Query: 166 TFMRRCFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGP 50
TF R C + P A +FL+ GKH+R WGP
Sbjct: 8 TFFRYCLLTLIFAGPPTAVLLKFLQA-PYGKHNRTGWGP 45
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 641 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 546
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 233
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 813
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 233
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 703 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 748
>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
to SP|Q969R2 Oxysterol-binding protein 2 {Homo sapiens};
contains Pfam profiles PF00169: PH domain, PF01237:
Oxysterol-binding protein
Length = 814
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +3
Query: 99 NRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY-PAGFMDVVSIEK 233
N ++A+T NE+ +K+RL D ++R D Y G ++ + EK
Sbjct: 704 NLTRFAITLNELTPGLKERLPPTDSRLRPDQRYLENGEFEMANTEK 749
>At4g00165.1 68417.m00017 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein contains Pfam
protease inhibitor/seed storage/LTP family domain
PF00234
Length = 128
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +2
Query: 485 NLCMITGGVTWGAWAPSCPARDIPAPSTLCTSRTPRDT 598
N+ G VT GA CP P P+ T++ PRDT
Sbjct: 17 NITFFFGHVTPGATVKPCP----PPPAKQATTKCPRDT 50
>At3g06990.1 68416.m00830 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 539
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 577 CAQCRRSRDVSRGTRWCPRAPSYA 506
C CR+ D S G C R PSYA
Sbjct: 186 CGLCRKEIDWSFGAFTCKRCPSYA 209
>At1g67870.1 68414.m07750 glycine-rich protein contains
non-consensus GG donor splice site at exon2; modeled to
est match.
Length = 279
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 576 HQGLHGTHLR--HEVEQRVHNRQGHEGVHLAAARQGHPPHHRRG 701
HQG+HG + H ++ + + H+G+H + GH H+ G
Sbjct: 154 HQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGG 197
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 577 CAQCRRSRDVSRGTRWCPRAPSYA 506
C CR+ D + G +C R P+YA
Sbjct: 199 CGVCRQKMDWTLGAFFCSRCPNYA 222
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 641 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 546
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
>At2g40760.1 68415.m05028 rhodanese-like domain-containing protein
contains rhodanese-like domain PF00581
Length = 474
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 681 DALAARQRDVRLRALADYEHVVQPRGEGVSRG 586
+ LA QRDVRL L E V P E + G
Sbjct: 158 EVLAFIQRDVRLNGLRQVETPVSPEQEAIHHG 189
>At2g26730.1 68415.m03206 leucine-rich repeat transmembrane protein
kinase, putative
Length = 658
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +2
Query: 374 HDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITG 505
H+ + +P ++N+ I+LDI++ I F NL +TG
Sbjct: 124 HNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTG 167
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 547 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKAYISL 663
R P +V + HT A T NNVF G+GT + +
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGI 362
>At5g22355.1 68418.m02608 DC1 domain-containing protein contains
Pfam PF03107: DC1 domain; similar to ULI3 [Arabidopsis
thaliana] GI:17225050
Length = 664
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -2
Query: 577 CAQCRRSRDVSRGTRWCPRAPSYAS 503
C CR+ G CPR P+YA+
Sbjct: 311 CGICRKDISQYHGAYLCPRCPNYAA 335
>At4g01740.1 68417.m00226 DC1 domain-containing protein similar to
T15B16.6 similar to A. thaliana CHP-rich hypothetical
proteins encoded by T10M13, GenBank accession number
AF001308
Length = 652
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 577 CAQCRRSRDVSRGTRWCPRAPSYAS 503
C CR+ D + G CPR P YA+
Sbjct: 284 CGVCRQKVDWTCGGFSCPRCPGYAA 308
>At3g07000.1 68416.m00831 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 574
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 577 CAQCRRSRDVSRGTRWCPRAPSYA 506
C CR+ D S G C R P+YA
Sbjct: 202 CGVCRKEIDWSLGAYSCKRCPNYA 225
>At1g62730.1 68414.m07080 expressed protein
Length = 304
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 603 EGVSRGVLDVHNVEGAGMSLAGHDGAHAPQVTPPVIIHKFPDSNLMKSI 457
EG+S V ++ +V A + A P PV++H P L+ S+
Sbjct: 219 EGLSNVVFEIASVANAHLLKARELAGKVPAEAKPVLLHSVPVQVLLDSL 267
>At1g26797.1 68414.m03263 self-incompatibility protein-related
similar to S3 self-incompatibility protein [Papaver
rhoeas] GI:1107841
Length = 140
Score = 27.5 bits (58), Expect = 9.1
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Frame = +1
Query: 439 HCNY--EDYGLHQV*VRELVYDHGRRNLGRVGTIVSRERHPG---SFDI 570
HC ED GLH++ RE + R NL R T + PG +FDI
Sbjct: 47 HCRNKGEDLGLHKIEYREQIDFRFRVNLRRTTTYTCKFSWPGNEKTFDI 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,731
Number of Sequences: 28952
Number of extensions: 390893
Number of successful extensions: 1228
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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