Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0884
         (685 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    26   0.33 
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.76 
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   2.3  
DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9 prot...    22   5.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   5.4  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -2

Query: 636 CWGPRVDLSSRRGAPELVPCLPTTPHPQ 553
           C    V+   RR  P  + CL TTP P+
Sbjct: 14  CTYGNVNYRQRRSQPLKISCLKTTPPPE 41


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 315 SFSLREDESRNDDANTARVQSRVRGGRHSLDEVRQ 419
           S++L   E+ +   N   +   V GGRH L+ + Q
Sbjct: 149 SYALTVAETADGRLNATIIADNVFGGRHGLETLNQ 183


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 461 KNPFSELMARSTPSLSNFIQAMSSPTHSTLYPG 363
           +NP  E    S  ++ + + A+S  T+STL PG
Sbjct: 31  ENPPPEDTPLSFKNIESHLNAISQITNSTLDPG 63


>DQ659249-1|ABG47447.1|  383|Tribolium castaneum chitinase 9
           protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 401 AMSSPTHSTLYPGSVG 354
           A++ PT+++LY G+ G
Sbjct: 269 ALADPTNTSLYAGTYG 284


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 576 LPTTPHPQVFPPR 538
           LP  PHP   PPR
Sbjct: 735 LPPPPHPHHQPPR 747


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 576 LPTTPHPQVFPPR 538
           LP  PHP   PPR
Sbjct: 627 LPPPPHPHHQPPR 639


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -2

Query: 480 RTWCNSKEPV 451
           R+WC+S +PV
Sbjct: 233 RSWCSSSQPV 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,393
Number of Sequences: 336
Number of extensions: 4198
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)