Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0884
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    30   0.27 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   1.9  
SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor |Schizo...    27   1.9  
SPCC965.06 |||potassium channel subunit |Schizosaccharomyces pom...    27   2.5  
SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces pombe...    27   2.5  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   3.3  
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   7.7  

>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 QRDSKLRQWIWRQQFVGQEVLRSTSGISDR 228
           + DS  R W W+ + +GQ VL ++ G S R
Sbjct: 419 KNDSSARTWNWKSKTLGQHVLPTSDGTSVR 448


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 680 RGAESGIWMCSRSFLAGVPGLTFPVDEALRSWS 582
           R  ESG    S++ + GV  L F  D+ LR W+
Sbjct: 175 RFLESGFLRLSKNLVPGVISLLFSRDDELRRWA 207


>SPCC417.05c |chr2|cfh2|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 512

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
 Frame = -3

Query: 662 IWMCSRSFLAGVPGLTFPVDEALRSWSH--AFPPHPTLRCF-RHVSEHGVFEHRPIAI 498
           +W  S+ +L GV  + +P  E    W+   A+  H     F + V +  VFE   I I
Sbjct: 418 MWKLSQFYLNGVDDVIYPNPELANEWAKAAAYKNHHLASTFVQDVGKEDVFEKTSITI 475


>SPCC965.06 |||potassium channel subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +1

Query: 562 GCGGKAWDQLRSASSTGKVNPGTP 633
           G G   W  L+S   TGK N G P
Sbjct: 216 GYGATVWSPLKSGILTGKYNDGIP 239


>SPAC589.07c |||WD repeat protein Atg18|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 373 KVECVGDDIAWMKFDKDGVLRAINSENG 456
           K+E   D +A + F+ DG + A  S+NG
Sbjct: 183 KIEAHKDSLACLAFNSDGTMLATASDNG 210


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +3

Query: 519 KNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQPWD 629
           K+ +F  +A +     WW+ + P+PE+   W     D
Sbjct: 400 KDEIFKQIAFSVVEKAWWKMLLPSPEQWNSWPSSSRD 436


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 280 PQGKKRYIAAAFPSACGKTNLA-MMTPTLPGYKVECVGDDIAWMKFDKDGVLRAINSENG 456
           P  K R+I  A PS  GKT++A ++   L    V  +  D  +   + +   RA N++  
Sbjct: 17  PWRKVRFIGIAGPSGSGKTSVAQLIVKALNLPHVVILSLDSFYKSLNAEQKKRAFNNDYD 76

Query: 457 F 459
           F
Sbjct: 77  F 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,100,514
Number of Sequences: 5004
Number of extensions: 67417
Number of successful extensions: 204
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)