Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0884
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0773 + 21043553-21043813,21044775-21045203 31 0.85
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 30 2.0
01_07_0109 - 41131714-41132988 30 2.0
11_06_0016 - 19284810-19284926,19285527-19286879 29 2.6
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072... 29 3.4
07_01_0239 + 1744353-1746365 29 4.5
01_06_0751 + 31690411-31690443,31692900-31694240 29 4.5
05_04_0053 + 17520202-17520984 28 6.0
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 28 6.0
03_05_1150 - 30758981-30759778,30759970-30760729,30760823-307609... 28 7.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 7.9
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 626 PGLTFPVDEALRSWSHAFPPHPTLRCFRHVSEHGVFE 516
P L P ++ +R W+H + H T EHG FE
Sbjct: 100 PTLACPSNDGIRFWAHEWEKHGTCAAAALGDEHGYFE 136
>03_02_0740 - 10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +3
Query: 546 ETPEGGVWWEG-MGPAPERLVDWKGQPWD----PSKKTPAAHPNS 665
E EGG WWEG + + +D+ PW+ K + HP+S
Sbjct: 1176 ELEEGGSWWEGRVSAVKPKSLDFPESPWEKYVIQYKNDGSDHPHS 1220
>01_07_0109 - 41131714-41132988
Length = 424
Score = 29.9 bits (64), Expect = 2.0
Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Frame = -3
Query: 587 WSHAFPPHPTLRCFRHVSEHGVFEHRPIA--IGFVAADVPG-------AIPKNPFSELMA 435
W HPTL C H H H P G+ ADV A P NPFS A
Sbjct: 68 WMSCAAAHPTLECHHHFCMHAHSYHPPGCPHNGYGRADVEDPFRCKCTAHPYNPFSGESA 127
Query: 434 RSTPSLSNFIQAMSSPTHSTLYPGSVGVI 348
+ + + + A ++ + LYP S +
Sbjct: 128 TADLTRTR-LSANATDGKNPLYPVSFAAV 155
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.5 bits (63), Expect = 2.6
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Frame = -3
Query: 572 PPHPTLRCFRHVSEHGV---FEHRPIAIGFVAADVPGAIPKNP-FSELMA--RSTPSLSN 411
PP P+ FR + + GV FEH + G V P A P+ P + L A + S++
Sbjct: 223 PPPPSKSAFREIMDRGVFHAFEHL-VETGEVPFQEPAAAPEPPSHARLYAPHEAAASVAR 281
Query: 410 FIQAM---SSPTHSTLYPGSVGVIIARFV 333
+ A+ ++P H L+ ++ V A FV
Sbjct: 282 AVDALGLGAAPVHLVLHDSAL-VAGAAFV 309
>10_08_0425 -
17806117-17806401,17806862-17806984,17807076-17807222,
17807307-17807450,17808557-17808668,17808762-17808898,
17809016-17809156,17810921-17811004,17811275-17811742,
17811858-17811936,17812494-17812506,17813884-17814460,
17814502-17814774,17814899-17815045,17815354-17815413,
17816124-17816510
Length = 1058
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/46 (43%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = -3
Query: 512 RPIAIGFVAADVPG---AIPKNPFSELMARSTPSLSNFIQAMSSPT 384
RP G + A VPG I P S L TPS S F Q SPT
Sbjct: 342 RPEVFGAIGASVPGQPSTILSAPPSLLGRPMTPSASPFPQTSQSPT 387
>07_01_0239 + 1744353-1746365
Length = 670
Score = 28.7 bits (61), Expect = 4.5
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Frame = -3
Query: 521 FEHRPIAIGFVAADVPGAIPKNP-FSELMARSTPSLSNFIQAMSSPTHSTLYPG--SVGV 351
++HR + + A VP A PK P S S L + SS + + LY + G
Sbjct: 182 YDHRRMQLNVTLAPVPMAKPKRPLLSATHNLSKLLLDHMYVGFSSSSSAALYISGHAHGH 241
Query: 350 IIARFVFPQAEGKAAAM 300
IA F F + +GK A++
Sbjct: 242 FIAGFCF-RLDGKPASL 257
>01_06_0751 + 31690411-31690443,31692900-31694240
Length = 457
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 68 VGSGGTPGWPCDPQNIVVLHKPANN 142
+ S G PGWP Q + H P N+
Sbjct: 326 ISSAGVPGWPDHSQRMQAWHAPENS 350
>05_04_0053 + 17520202-17520984
Length = 260
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 193 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARS 83
++ T AA++T V+Y +V R+V V V+GP RS
Sbjct: 183 VSPDTAAALATDVSYGVVALRVVVLGRVRFVSGPFRS 219
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 439 INSENGFFGIAPGTSAATNP--IAMGRCSKTPCSLTWR--KHLRVGCGGKAWDQLRSASS 606
I ENG F G+S AT P +A G ++ L R KHL G A D++ S S
Sbjct: 695 IERENGSFNSQDGSSVATGPLSVAFGFVTRLASELFARGKKHLD-GSNSDAMDEVESHQS 753
>03_05_1150 -
30758981-30759778,30759970-30760729,30760823-30760920,
30761997-30762521
Length = 726
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 550 HLRVGCGGKAWDQLRSASSTGKVNPGTPARKLRLHIQIP 666
H+ + GG W Q RSA S+ A+ +R + Q+P
Sbjct: 398 HVALFHGGDIWRQSRSAMSSAAAKMDVHAKLMRRYKQVP 436
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = -3
Query: 206 ERSTSCPTNCCRHIHCRSLLSRC*PACGVR-RCSEGRRASPECHR 75
+R +C + CR C + C C R RC + SP CHR
Sbjct: 417 QRLRNCGRHACRRRCCEGDCAPCPEVCDKRLRCGNHKCLSP-CHR 460
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,711,276
Number of Sequences: 37544
Number of extensions: 556399
Number of successful extensions: 2008
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2008
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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