Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0884
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0) 153 2e-37
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0) 150 9e-37
SB_37397| Best HMM Match : PEPCK (HMM E-Value=0) 149 3e-36
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076) 29 3.5
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 29 4.6
SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22) 28 8.1
>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 549
Score = 153 bits (370), Expect = 2e-37
Identities = 68/89 (76%), Positives = 77/89 (86%)
Frame = +1
Query: 256 MLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLR 435
M+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDIAWM FDKDG LR
Sbjct: 126 MMILGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDIAWMWFDKDGTLR 185
Query: 436 AINSENGFFGIAPGTSAATNPIAMGRCSK 522
AIN E GFFG+APGTS +NPIAM K
Sbjct: 186 AINPECGFFGVAPGTSFLSNPIAMSTFQK 214
Score = 68.9 bits (161), Expect = 4e-12
Identities = 40/89 (44%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 RIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEIVXXXXX 166
R+G+ VL L D FV CLH+VG G WPCDP+ ++ H P EI
Sbjct: 37 RMGSHVLKALG-DGDFVRCLHSVGGPLHDGKNNVPWPCDPERTLITHFPETREIKSYGSG 95
Query: 167 XXXXXXXXKKCFALRLGSVIARREG*LAE 253
KKCFALR+ SVIAR EG LAE
Sbjct: 96 YGGNSLLGKKCFALRIASVIARDEGWLAE 124
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 8/66 (12%)
Frame = +3
Query: 510 TVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDP-----SKKTPAAHPNS 665
T K+T+FTNVA+T +G WWEG+ P + ++ W G P W P ++KT AAHPNS
Sbjct: 211 TFQKDTIFTNVAKTSDGDFWWEGLNPPADGIKIRSWLGDPDWKPEVAGKTRKT-AAHPNS 269
Query: 666 RFCTPA 683
RFC P+
Sbjct: 270 RFCAPS 275
>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 707
Score = 150 bits (364), Expect = 9e-37
Identities = 66/89 (74%), Positives = 77/89 (86%)
Frame = +1
Query: 256 MLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLR 435
MLI+ +TNP+GKK+YIAAAFPSACGKTNLAM+ PT+PG+KV+CVGDDIAWM FDK G LR
Sbjct: 440 MLIMALTNPEGKKKYIAAAFPSACGKTNLAMLKPTIPGWKVDCVGDDIAWMWFDKTGQLR 499
Query: 436 AINSENGFFGIAPGTSAATNPIAMGRCSK 522
AIN E+GFFG+APGTS TNP A+ C K
Sbjct: 500 AINPESGFFGVAPGTSMKTNPEALKTCLK 528
Score = 68.9 bits (161), Expect = 4e-12
Identities = 29/61 (47%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Frame = +3
Query: 510 TVFKNTVFTNVAETPEGGVWWEGMGPAPE--RLVDWKGQP-WDPSKKTPAAHPNSRFCTP 680
T K+T+FTN A T +G WWEG+ P+ + W G+ W P + AAHPNSRFCTP
Sbjct: 525 TCLKDTIFTNTAMTSDGDFWWEGLPDPPKGVSITSWLGEENWSPESGSKAAHPNSRFCTP 584
Query: 681 A 683
+
Sbjct: 585 S 585
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/95 (43%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Frame = +2
Query: 2 RIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEIVXXXXX 166
R+G+ VL L Q + FV CLH+VG G WPCDP ++ H PA+N I
Sbjct: 351 RMGSHVLKALDQGD-FVKCLHSVGKPLKEGEKDVLWPCDPDRTIITHFPADNYIKSFGSG 409
Query: 167 XXXXXXXXKKCFALRLGSVIARREG*LAELCLSSA 271
KKCFALR+ S IA +EG LAE L A
Sbjct: 410 YGGNSLLGKKCFALRIASNIALKEGWLAEHMLIMA 444
>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
Length = 613
Score = 149 bits (360), Expect = 3e-36
Identities = 64/84 (76%), Positives = 75/84 (89%)
Frame = +1
Query: 256 MLIVGITNPQGKKRYIAAAFPSACGKTNLAMMTPTLPGYKVECVGDDIAWMKFDKDGVLR 435
M+I+G+TNP+GKK YIAAAFPSACGKTNLAM+TPT+PG+K ECVGDDI WM FDKDG LR
Sbjct: 256 MMIMGLTNPEGKKIYIAAAFPSACGKTNLAMLTPTIPGWKCECVGDDINWMWFDKDGTLR 315
Query: 436 AINSENGFFGIAPGTSAATNPIAM 507
AIN E+GFFG+ PGT+ +NPIAM
Sbjct: 316 AINPESGFFGVCPGTTFTSNPIAM 339
Score = 62.5 bits (145), Expect = 3e-10
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Frame = +3
Query: 510 TVFKNTVFTNVAETPEGGVWWEGMGPAPERLVDWKGQP-WDPSKKTP-AAHPNSRFCTPA 683
T K+T+FTNVA T +G WWE ++ WKG P W P++ P AAHPNSRFC P+
Sbjct: 341 TFQKDTIFTNVAVTSDGDFWWE----EGIKIRSWKGDPDWKPTENGPTAAHPNSRFCAPS 396
Score = 59.7 bits (138), Expect = 2e-09
Identities = 37/89 (41%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Frame = +2
Query: 2 RIGAKVLDILRQDEQFVHCLHAVGSGGTPG-----WPCDPQNIVVLHKPANNEIVXXXXX 166
R+G+ VL L D FV +H+VG G WPCDP+ ++ H PA EI
Sbjct: 167 RMGSHVLKALG-DGDFVRGVHSVGFPLKEGVKEVPWPCDPERTLITHFPATREIKSYGSG 225
Query: 167 XXXXXXXXKKCFALRLGSVIARREG*LAE 253
KKCFALR+ S IA EG LAE
Sbjct: 226 YGGNSLLGKKCFALRIASNIAHDEGWLAE 254
>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Frame = +1
Query: 415 DKDGVLRAINSENGFFGIAPGTSAATNPIA-----MGRCSKTPCSLTWRKHLRVGCGGKA 579
++ G + E F G TS TN I + R +T S WR+ R+ CGGK
Sbjct: 1078 EEQGSCTHSDEERAFTGTC-STSTITNAIKASVWILARSRRTQASAPWRRWDRIVCGGKF 1136
Query: 580 WDQ 588
+Q
Sbjct: 1137 GEQ 1139
>SB_33578| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
Length = 888
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +3
Query: 573 EGMGPAPERLVDWKGQPWDPSKKTPAAHPN 662
+ +GP P DW + WD K A H N
Sbjct: 35 DSLGPWPSLTDDWDEESWDLEKAVAAMHRN 64
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Frame = +1
Query: 358 TLPGYKVECVGDDIAWMKFDKDGVLRAINSE-----NGFFGIAPGTSAATNPIAMGRCSK 522
TLP I W K D+ G L+ + S NG A T A C+
Sbjct: 585 TLPCRATAADAPVITWFKADQSGALQQLTSSGVSQANGDLSFASVTRQDRGMYACQACNA 644
Query: 523 TPCSLTWRKHLRV 561
C++T R L V
Sbjct: 645 AGCTMTPRASLNV 657
>SB_13565| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 597
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 559 VGCGGKAWDQLRSASSTG 612
VGCGG A +Q+ +ASSTG
Sbjct: 435 VGCGGYADNQVAAASSTG 452
>SB_48632| Best HMM Match : DUF265 (HMM E-Value=7.6e-22)
Length = 455
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Frame = -3
Query: 245 AILRDG-RSLIPDVERSTSCPTNCCRHIHCRSLLSRC*PACGVRRC-----SEGRRASPE 84
++LR G S P V + CRHI C LSR C V S RR S E
Sbjct: 272 SLLRTGISSASPTVSIRDVLLSLTCRHITCSIALSRLITTCTVSDTLRNGGSTSRRFSSE 331
Query: 83 CHRIR 69
C +R
Sbjct: 332 CDTLR 336
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,931,275
Number of Sequences: 59808
Number of extensions: 596281
Number of successful extensions: 2381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2374
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -