Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0884
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g04130.1 68417.m00583 Ulp1 protease family protein contains P...    34   0.10 
At4g16550.1 68417.m02504 heat shock protein-related contains sim...    30   1.2  
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    30   1.2  
At3g45720.1 68416.m04941 proton-dependent oligopeptide transport...    30   1.2  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    29   2.9  
At4g35070.1 68417.m04978 expressed protein                             29   3.8  
At1g48490.1 68414.m05420 protein kinase, putative similar to inc...    29   3.8  
At5g06260.1 68418.m00700 nucleolar protein-related contains weak...    28   6.6  
At2g38610.2 68415.m04743 KH domain-containing protein                  28   6.6  
At2g38610.1 68415.m04742 KH domain-containing protein                  28   6.6  

>At4g04130.1 68417.m00583 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; similar to At2g11345,  At3g42690
          Length = 1200

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -2

Query: 660 LDVQPEFSCWGPRVDLSSRRGAPELVPCLPTTPHPQVFP 544
           +D +P  +   P +DL +R G+P   PC P TP  QV P
Sbjct: 665 MDTKPIKTMEEP-LDLGNRAGSPRQTPCSPVTPIAQVIP 702


>At4g16550.1 68417.m02504 heat shock protein-related contains
           similarity to Swiss-Prot:P31170 small heat shock
           protein, chloroplast precursor [Arabidopsis thaliana]
          Length = 743

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = -3

Query: 569 PHPTLRCFRHVSEHGVFEHRPIAIG--FVAADVPGAIPKNPFSELMARSTPSLSNFIQAM 396
           PHP   C  + SE   +E + +  G  +V  D+PG +PK  F+  +      ++    A+
Sbjct: 646 PHP---CVNYGSEMA-YESKQLQNGGLYVRVDMPG-VPKENFTVAVMNGRVRVTGEAPAI 700

Query: 395 SSPTHSTLYPGSVGVIIARFVFP 327
           S  +    Y G V ++   F  P
Sbjct: 701 SHDSSGRFYTGDVAMLSTPFDIP 723


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -1

Query: 193 LAQQTVAAISTAVAYYLVVSRLVEYDDVLRVAGPARSATGSDCVKTMNKLLVL 35
           L ++TVA      +  LV    +E DDVL++A    +A   D + T+ K LV+
Sbjct: 175 LQERTVALAKELASLKLVSDLSLEEDDVLKLALLGNNAKTKDTIDTLVKSLVI 227


>At3g45720.1 68416.m04941 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 21/58 (36%), Positives = 30/58 (51%)
 Frame = -1

Query: 550 VSATLVNTVFLNTVPLLSDS*RLTYLVQFQRTRFQS*WPAVRRPCRTSSRLCRPPRTL 377
           V+A L ++ F N +P++S S  ++ L  F  T   S      RPC T S LC+ P  L
Sbjct: 79  VTAILADSFFGN-IPVISASAFISLLGIFLLTLISSFENLRPRPCETGSILCQSPSKL 135


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400);
            similar to WDR protein, form B (GI:14970593) [Mus
            musculus]
          Length = 1589

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 549  TPEGGVWWEG-MGPAPERLVDWKGQPWD 629
            T EGG WWEG +  +  +  D+   PW+
Sbjct: 1423 TGEGGAWWEGRIESSQVKSTDFPESPWE 1450


>At4g35070.1 68417.m04978 expressed protein 
          Length = 265

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 233 DGRSLIPDVERSTSCPTNCCRHIHCRSLLSRC*PACGVRRCSEGRRASPECH 78
           DG SL     + +SC  NC  +   R L   C   C    C EG    P C+
Sbjct: 202 DGNSLPAKKMKMSSCCCNCGSNGVTRVLFLPCRHLCCCMDCEEGLLLCPICN 253


>At1g48490.1 68414.m05420 protein kinase, putative similar to
           incomplete root hair elongation (IRE) [Arabidopsis
           thaliana] gi|6729346|dbj|BAA89783
          Length = 878

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 678 GCRIWNLDVQPEFSCWGPRVDLSSRRGAPELVPCLPTT 565
           G +I N  +  E     P++   SRRG+ +++ C P T
Sbjct: 259 GMKISNASLTEELDVLSPKLSDWSRRGSEDMLDCFPET 296


>At5g06260.1 68418.m00700 nucleolar protein-related contains weak
           similarity to nucleolar protein C7C (GI:13540302)
           [Rattus norvegicus]
          Length = 424

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 480 RTWCNSKEPVFRVDGPQYAVLVELHPGYVVPHALY 376
           R+WC+    + +  G        + PGY VPH LY
Sbjct: 173 RSWCSFVPTIRKFLGSLLMPPSTVRPGYQVPHLLY 207


>At2g38610.2 68415.m04743 KH domain-containing protein
          Length = 286

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +3

Query: 486 RYESDSNGTVFKNTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 644
           R    S   +  + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 78  RLRHRSPSPMASSNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


>At2g38610.1 68415.m04742 KH domain-containing protein
          Length = 286

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
 Frame = +3

Query: 486 RYESDSNGTVFKNTVFTNVAETPEGGVWWEGMGP-----APERLVDWKGQPWDPSKKT 644
           R    S   +  + + +NV+ T  GG  W G+        P   +DW+G P  PS  T
Sbjct: 78  RLRHRSPSPMASSNLMSNVSNTGLGG--WNGLSQERLSGTPGMTMDWQGAPGSPSSYT 133


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,988,313
Number of Sequences: 28952
Number of extensions: 388765
Number of successful extensions: 1176
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1176
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)