Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0881
         (852 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    46   7e-06
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   5.9  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    26   5.9  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    26   7.8  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   7.8  

>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 564 QFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTTCGFSIFWADD-GLDTGPI 740
           +F+P +++    Y  I  HPS+LP++RGA  V  T++ GD   G +I   D    D G  
Sbjct: 90  RFVPFKILNQLPYGGINIHPSLLPKYRGAGPVYSTILNGDRLAGVTIQTMDSKQFDKGKS 149

Query: 741 LLQ 749
           L Q
Sbjct: 150 LAQ 152


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 119 WGFKVR*SFK*ECFDGFMLVQSRSTRREVASSSIH 223
           WGF++    +  CF+G  L  +++ R  +   SIH
Sbjct: 373 WGFRLDDIHRRTCFNGKRLYITKAIRDSMVGDSIH 407


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 530 HRFVLLKSSGMTCPLIRQDLYL*TGLPFCAAI 435
           +RFV LKS+  T P+  + L+  + LP C  I
Sbjct: 11  NRFVRLKSTSATSPITYKALHANSPLPRCRII 42


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 591 APKYESICYHPSILPRHRGASSVNWTLIEG 680
           AP+ ES  +  SI+  H GA S+  TL  G
Sbjct: 64  APEIESYIHDASIVISHAGAGSILQTLRSG 93


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 537 DLNVLPFCTQFIPMEVITAPKYESICYHPSI 629
           DLNV    + F+ + VI  PKY+   Y  ++
Sbjct: 194 DLNVSLAVSNFVNLIVIREPKYQKFAYGKAV 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,614,807
Number of Sequences: 5004
Number of extensions: 77892
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)