Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0881
         (852 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0306 + 28357321-28357446,28357551-28357748,28357828-283579...    51   1e-06
05_03_0240 + 10813886-10814060,10814164-10814275,10814901-108150...    33   0.38 
08_02_1153 + 24724469-24724811,24724910-24725021,24725661-247258...    31   1.2  
01_07_0048 - 40741101-40741109,40741110-40741185,40741691-407417...    30   2.0  
12_02_0436 - 19076486-19076609,19076860-19076944,19077321-190774...    28   8.2  

>01_06_0306 +
           28357321-28357446,28357551-28357748,28357828-28357930,
           28358665-28358735,28358820-28358924,28359372-28359405,
           28359616-28359716,28360300-28360343,28360360-28360432,
           28360489-28360629,28360769-28360861
          Length = 362

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 24/83 (28%), Positives = 40/83 (48%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTT 689
           L   K V  +L +       +P   +  P Y ++  HPS+LP +RGA+ V   L +G   
Sbjct: 112 LSDLKEVRPELCITAAYGNILPQRFLDIPPYGTVNIHPSLLPLYRGAAPVQRALQDGVEE 171

Query: 690 CGFSIFWADDGLDTGPILLQKSY 758
            G S+ +    LD GP++  + +
Sbjct: 172 TGVSLAYTVRALDAGPVIASEKF 194


>05_03_0240 +
           10813886-10814060,10814164-10814275,10814901-10815077,
           10815287-10815413,10815529-10815642
          Length = 234

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGAS----SVNWTLI- 674
           L   + +  D  +L    + IP+E++ A     +  HPS+LP   G       V+  +I 
Sbjct: 92  LNGLRELRVDFILLAGYLKLIPVELVQAYPKSILNIHPSLLPAFGGKGYYGLKVHKAVIA 151

Query: 675 EGDTTCGFSIFWADDGLDTGPILLQKSYP 761
            G    G ++ + D+  DTG  L Q+  P
Sbjct: 152 SGARYSGPTVHFVDEHYDTGRTLAQRVVP 180


>08_02_1153 +
           24724469-24724811,24724910-24725021,24725661-24725837,
           24726046-24726172,24726295-24726408
          Length = 290

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGAS----SVNWTLI- 674
           L   + +  D  +L    + IP+E++       +  HPS+LP   G       V+  +I 
Sbjct: 148 LNALRELRVDFILLAGYLKLIPVELVQEYPKSILNIHPSLLPAFGGKGYYGLKVHKAVIA 207

Query: 675 EGDTTCGFSIFWADDGLDTGPILLQKSYP 761
            G    G ++ + D+  DTG  L Q+  P
Sbjct: 208 SGARYSGPTVHFVDEHYDTGRTLAQRVVP 236


>01_07_0048 -
           40741101-40741109,40741110-40741185,40741691-40741741,
           40742316-40742584
          Length = 134

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 266 RQYH*LIMHQKKA*ELPLLAKVHLQLKFSNSSKETVMKLWVSSQFLTKA 412
           R YH    HQ +   LP + K +L++K SN   E VMK       LT++
Sbjct: 81  RSYHHHHHHQFREPILPQIPKSYLRIKDSNMKVEVVMKYLAGKLGLTQS 129


>12_02_0436 -
           19076486-19076609,19076860-19076944,19077321-19077486,
           19078213-19078889,19079372-19079475,19079582-19079817
          Length = 463

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +2

Query: 557 LHSIHTHGGDHGS*IREHLLPSEHFTQTSGSF 652
           LH  H+HG  HG     ++L    FT   G F
Sbjct: 165 LHHFHSHGAVHGCVTASNILIDNDFTARLGDF 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,454,847
Number of Sequences: 37544
Number of extensions: 508593
Number of successful extensions: 1026
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)