Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0881
         (852 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)             141   6e-34
SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08)        82   6e-16
SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)                       32   0.51 
SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 29   3.6  
SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)                     29   6.3  

>SB_52935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score =  141 bits (342), Expect = 6e-34
 Identities = 60/82 (73%), Positives = 72/82 (87%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTT 689
           +++YK+  A+LNV+PFC+QFIPM VI  PK+ SI YHPS+LPRHRGAS++NWTL+EGD  
Sbjct: 411 VDKYKACGAELNVMPFCSQFIPMNVIDFPKHGSIIYHPSLLPRHRGASAINWTLMEGDKK 470

Query: 690 CGFSIFWADDGLDTGPILLQKS 755
            GFSIFWADDGLDTGPILLQKS
Sbjct: 471 AGFSIFWADDGLDTGPILLQKS 492



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 33/68 (48%), Positives = 47/68 (69%)
 Frame = +1

Query: 304 LRVAIIGQSTFAAEVFKLIQRDGHEVVGVFTIPDKGNREDPLATIAAQNGKPVYKYKSWR 483
           L++AIIGQS F  EV++ ++  GHE+VGVFT+PD   + D LA  A ++G  V+K+  WR
Sbjct: 342 LKIAIIGQSQFGLEVYRNLRIKGHEIVGVFTVPDIKGKPDILAAGAEEDGVKVFKFPRWR 401

Query: 484 IKGQVIPE 507
            KG+ I E
Sbjct: 402 TKGEPIAE 409



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 20/39 (51%), Positives = 28/39 (71%)
 Frame = +2

Query: 734 PHITAKELSQTIDDTVDTIYNKFLYPEGIKALAEAVNMV 850
           P +  K +    +DTVDT+YN+FLYPEGIK + EAV ++
Sbjct: 486 PILLQKSIQVDPNDTVDTLYNRFLYPEGIKGMVEAVELI 524


>SB_30682| Best HMM Match : Formyl_trans_N (HMM E-Value=2.8e-08)
          Length = 146

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 33/51 (64%), Positives = 44/51 (86%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGASSVN 662
           +++YK+  A+LNV+PFC+QFIPM VI  PK+ SI YHPS+LPRHRGAS++N
Sbjct: 95  VDKYKACGAELNVMPFCSQFIPMNVIDFPKHGSIIYHPSLLPRHRGASAIN 145



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 33/68 (48%), Positives = 47/68 (69%)
 Frame = +1

Query: 304 LRVAIIGQSTFAAEVFKLIQRDGHEVVGVFTIPDKGNREDPLATIAAQNGKPVYKYKSWR 483
           L++AIIGQS F  EV++ ++  GHE+VGVFT+PD   + D LA  A ++G  V+K+  WR
Sbjct: 26  LKIAIIGQSQFGLEVYRNLRIKGHEIVGVFTVPDIKGKPDILAAGAEEDGVKVFKFPRWR 85

Query: 484 IKGQVIPE 507
            KG+ I E
Sbjct: 86  TKGEPIAE 93


>SB_5097| Best HMM Match : GARS_A (HMM E-Value=0)
          Length = 893

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 618 HPSILPRHRGASSVNWTLIEGDTTCGFSIFWADDGLDTGPILLQKSYP 761
           HPS+LP  +G  +    L  G    G ++ +  + +D G I+ Q++ P
Sbjct: 800 HPSLLPSFKGIDAHQQVLAAGVCISGCTVHFVVEEVDAGAIITQEAVP 847


>SB_35539| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 1105

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 522  KSVNADLNVLPFCTQFIPMEVITAPKY 602
            +   ADLN+   C +  P++V T PKY
Sbjct: 956  RETTADLNIALLCLRATPIDVTTRPKY 982


>SB_58222| Best HMM Match : HS1_rep (HMM E-Value=0)
          Length = 727

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 585 ITAPKYESICYHPSILPRHRGASSVNWTLIEGDTTCGFSI 704
           ++AP Y S C    + PR R   S++ + ++  +TC  SI
Sbjct: 610 VSAPDYHSTCPRSIVTPRVRARLSLHVSALDCHSTCPRSI 649


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,192,860
Number of Sequences: 59808
Number of extensions: 588322
Number of successful extensions: 1145
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)