Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0881
         (852 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66520.1 68414.m07558 formyltransferase, putative similar to ...    46   4e-05
At1g31220.1 68414.m03821 phosphoribosylglycinamide formyltransfe...    29   3.0  
At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase, p...    29   3.9  
At3g19370.1 68416.m02457 expressed protein                             28   9.1  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    28   9.1  

>At1g66520.1 68414.m07558 formyltransferase, putative similar to
           methionyl-tRNA formyltransferase [strain N315-
           Staphylococcus aureus] SWISS-PROT:Q99UQ2
          Length = 355

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = +3

Query: 510 LEQYKSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGASSVNWTLIEGDTT 689
           L   + +  +L +       +P + +  P + ++  HPS+LP +RGA+ V   L +G   
Sbjct: 104 LSALRELQPELCITAAYGNILPTKFLKIPVHGTVNIHPSLLPLYRGAAPVQRALQDGVPE 163

Query: 690 CGFSIFWADDGLDTGPILLQKSY 758
            G S+ +    LD GP++  K +
Sbjct: 164 TGVSLAFTVRKLDAGPVIASKRF 186


>At1g31220.1 68414.m03821 phosphoribosylglycinamide
           formyltransferase similar to phosphoribosylglycinamide
           formyltransferase, chloroplast precursor [Arabidopsis
           thaliana] SWISS-PROT:P52422
          Length = 292

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = +3

Query: 522 KSVNADLNVLPFCTQFIPMEVITAPKYESICYHPSILPRHRGAS----SVNWTLIE-GDT 686
           +    D  +L    + IP+E++ A     +  HP++LP   G       V+  ++E G  
Sbjct: 154 RKYGVDFVLLAGYLKLIPVELVQAFPKRILNIHPALLPAFGGKGLYGIKVHKAVLESGAR 213

Query: 687 TCGFSIFWADDGLDTGPILLQKS 755
             G +I + ++  DTG IL Q +
Sbjct: 214 YSGPTIHFVNEEYDTGRILAQSA 236


>At2g29130.1 68415.m03541 laccase, putative / diphenol oxidase,
           putative similar to laccase [Liriodendron
           tulipifera][GI:1621467]
          Length = 573

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 16/56 (28%), Positives = 29/56 (51%)
 Frame = +1

Query: 250 KPRNMPPVSLTDHAPKKSLRVAIIGQSTFAAEVFKLIQRDGHEVVGVFTIPDKGNR 417
           KP ++PP++ T +A   +     +  STF A V K++ +     +G+ T P   N+
Sbjct: 325 KP-SLPPINSTSYAANFTKMFRSLASSTFPANVPKVVDKQYFFAIGLGTNPCPKNQ 379


>At3g19370.1 68416.m02457 expressed protein 
          Length = 704

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 286 HAPKKSLRVAIIGQSTFAAEVFKLIQRDGHE 378
           ++PKK  RV++ G+ +   E+F   +  GHE
Sbjct: 58  NSPKKDARVSLYGEKSVVDEIFLEDEEMGHE 88


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 268 PVSLTDHAPKKSLRVAIIGQSTFAAEVFKLIQRDGHEVVGVF 393
           P++  +  P   ++  I+GQ T    V+  +  DG E+VG++
Sbjct: 144 PIARIEEMP---IQPTIVGQETMLERVWTRLTEDGDEIVGLY 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,328
Number of Sequences: 28952
Number of extensions: 413676
Number of successful extensions: 833
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1980143200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)