Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0880
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802...    31   0.64 
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98...    28   5.9  
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508...    28   5.9  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   7.8  

>04_04_1448 +
           33679110-33679140,33679858-33680057,33680163-33680272,
           33680372-33680591,33680672-33680794,33680892-33680960,
           33681915-33682157,33682235-33682297,33682414-33682477,
           33682740-33682810
          Length = 397

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +2

Query: 203 GGNFSKNVPTKESPPPSRDGVHDASSEERLGHIQLSKVPS 322
           GG FS+N PTK+S PP ++G++       +GHI +    S
Sbjct: 295 GGRFSRNEPTKDSAPP-QNGIN-----RNIGHIDVPNTRS 328


>05_01_0148 -
           985745-986180,986290-986385,986498-986694,986824-986919,
           987020-987059,987751-987857
          Length = 323

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +3

Query: 363 GRVRKISESRSEGPALS---PRSAGLSPH--RSAPAMRSLSYCRAPHSRVS 500
           GR R  S SRS   + S    RS   SP   R     RSLSY R+P   +S
Sbjct: 163 GRSRSYSRSRSRSRSYSRSRSRSLSGSPRARRELERSRSLSYSRSPRRSIS 213


>03_05_0176 +
           21546952-21547887,21548856-21548921,21549959-21550877,
           21551277-21551449,21551927-21552475
          Length = 880

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 237 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLY-FRKIS 103
           S  GTF    P +  +K C+RK+ + S  ++++  T CL  F+ +S
Sbjct: 204 SKAGTFRWMAPEMIHDKRCNRKVDVYSFGLVLWELTTCLVPFQNLS 249


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 296 VPIVLHYWHHERHLAKVAVTLLL 228
           V  + H+ HH  HL  VAV LLL
Sbjct: 7   VAFLHHHHHHHHHLLAVAVVLLL 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,821,513
Number of Sequences: 37544
Number of extensions: 291947
Number of successful extensions: 940
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)