Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0880
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.50 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   3.5  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.7  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    22   6.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    22   6.1  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.50
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 430  SPADRGDNAGPSDRDSDIFRTLPPT---LNPAFSADSEARRD 314
            SP+DRG N   SDR      T PPT   ++ A S D ++ RD
Sbjct: 1380 SPSDRGRNDDGSDR-----LTSPPTPLSISRAGSRDEDSTRD 1416


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 663 HKHALTHELLSSRRDSERPSA 601
           H+  L +ELLSS    ERP A
Sbjct: 54  HEKRLLNELLSSYNTLERPVA 74


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 663 HKHALTHELLSSRRDSERPSA 601
           H+  L +ELLSS    ERP A
Sbjct: 54  HEKRLLNELLSSYNTLERPVA 74


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 198 STEAISLKTFQQKSHR 245
           S E ISL T QQK H+
Sbjct: 224 SDEDISLTTHQQKRHK 239


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 337 RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 426
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 337 RRRRGSTWEAGCGKYRSHGPKARRCHHDRQ 426
           + +R   WE    KY S G   +R  H  Q
Sbjct: 91  KTKRPKDWERLSAKYDSTGEYKKRYEHGLQ 120


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 46  YCVSCGFH 23
           YCV+CG H
Sbjct: 542 YCVACGLH 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,372
Number of Sequences: 438
Number of extensions: 2818
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)