Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0880
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21720.1 68415.m02584 hypothetical protein contains Pfam prof...    28   5.0  
At5g13280.1 68418.m01525 aspartate kinase identical to aspartate...    28   6.6  
At5g32590.1 68418.m03867 myosin heavy chain-related similar to M...    27   8.7  

>At2g21720.1 68415.m02584 hypothetical protein contains Pfam
           profile: PF04842 plant protein of unknown function
           (DUF639)
          Length = 703

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = +3

Query: 168 LIYANIFCFVSTEAISLKTFQQKSHRHLREMAFMMPVV 281
           +I+  ++CFV T ++       +S+R ++E    +P+V
Sbjct: 656 IIFGIVYCFVMTSSVGTYMSNDQSNRRMKEWWDSIPIV 693


>At5g13280.1 68418.m01525 aspartate kinase identical to aspartate
           kinase [Arabidopsis thaliana] GI:4376158
          Length = 569

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = -1

Query: 237 SFVGTFLEKLPPLRRNKICSRKLTLRSIMILIFFFTECLYFRKISGFCRNL*VK 76
           S + T+LE+L  L +     ++LTLR+   L+  F ECL  R  + +   + VK
Sbjct: 172 SVILTYLEELEQLLKGIAMMKELTLRTRDYLV-SFGECLSTRIFAAYLNTIGVK 224


>At5g32590.1 68418.m03867 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 761

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 672 RPAHKHALTHELLSSRRDSERPSARFNFSTNLL 574
           R  H   L+H   S  RDS RP++R   S+  L
Sbjct: 328 REGHSGRLSHRERSPHRDSPRPASRTGLSSERL 360


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,261,046
Number of Sequences: 28952
Number of extensions: 217952
Number of successful extensions: 660
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)