Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0878
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265...    29   3.9  
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426...    28   6.7  
07_03_0960 - 22902279-22902530,22902604-22902726,22902855-229029...    28   6.7  

>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
            2657523-2657649,2657731-2657812,2658172-2658196
          Length = 2621

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +1

Query: 115  SSASKSRLMTTTGGAQGVGEVPPGGINALLEVGQSLAQQMQAANPD 252
            S+ SK+ L +  GG++G+G +    +    ++ Q+L ++++ A  D
Sbjct: 938  SALSKNALPSDLGGSEGLGSLALSSVECAAKLVQNLQEKLEHAQTD 983


>08_02_1554 +
           27841801-27842007,27842282-27842455,27842554-27842653,
           27843273-27843725,27843936-27844469,27844500-27844580,
           27844690-27844781,27844890-27844963,27845071-27845293,
           27845429-27845522,27845607-27845761,27845899-27846129,
           27846803-27847003,27847257-27847382,27847497-27847558,
           27847775-27847892,27848040-27848324,27848475-27848513
          Length = 1082

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 386 VLLSSLSIPTSHDKSEILLYLLKIVKRFSNHTTTQPNTDVKMLLQ 520
           VLL   ++   H++ +  LYLLK+    S+++ +Q N ++   +Q
Sbjct: 429 VLLHFEAVDQKHNRGKEFLYLLKVGFENSSYSNSQGNAELSWSIQ 473


>07_03_0960 -
           22902279-22902530,22902604-22902726,22902855-22902941,
           22903017-22903068,22903197-22903321,22903476-22903684,
           22903990-22904191,22906205-22906309,22907264-22907325,
           22907625-22907814,22907887-22907982,22908069-22908171,
           22909117-22909220,22910239-22910325,22911238-22911323,
           22911410-22911502,22912586-22912673,22912786-22912898,
           22912989-22913111,22914473-22914524,22915185-22915286,
           22915539-22915582,22915667-22915740,22915825-22915916,
           22916566-22916633,22918572-22918647,22918767-22918952
          Length = 997

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 332 ISIEPVRGDWDPQFSYWSVLLSSLSIPTSHDKSEILLYLL 451
           +S+E   GDW  +FS++SV++    +   H+  E ++ LL
Sbjct: 343 MSLEAGEGDWSYEFSFFSVVIKLTDV--GHEHMEDIVGLL 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,417,527
Number of Sequences: 37544
Number of extensions: 349268
Number of successful extensions: 729
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)