Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0877
(469 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 30 0.15
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 0.35
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 28 0.62
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 0.62
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 27 1.9
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 26 2.5
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 2.5
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 2.5
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 3.3
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 4.4
SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr... 25 4.4
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 5.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 5.8
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 5.8
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 25 5.8
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 25 7.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.6
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 25 7.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 7.6
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 25 7.6
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 30.3 bits (65), Expect = 0.15
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = -3
Query: 341 LVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVP 162
L + PS+D P S PP+ S S + S P+ + + AP P P
Sbjct: 45 LTIPPPPSVDHSAPPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104
Query: 161 ERRG 150
+ G
Sbjct: 105 PQGG 108
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 29.1 bits (62), Expect = 0.35
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -3
Query: 296 SSRPPAMSTSNMTSHSVGSRVLIRPSLGTCRLRRDRHRPAPDPVPERRGNRS 141
S R P ST+ +SHS S R S+GT R + AP P+ N +
Sbjct: 146 SPRTPIGSTTPKSSHSPPSTRKRRGSVGTTATHTKRSKNAPKTSPKDASNET 197
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 28.3 bits (60), Expect = 0.62
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 95 QRIKTRKRDEKEKYDPNGFRDALVQGLERAGGDLDAAYKYLDSAGSKLD 241
QR K+D+KEK + ++A V+ +E+A L+ A K + K D
Sbjct: 208 QRPSVIKKDKKEKKEGKPSQEASVKSVEKAPKGLEGAKKEKQNKKEKKD 256
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 0.62
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Frame = -3
Query: 311 TEPPGSS-RPPAMSTSNMTSHSVGSRVLIRPS--LGTCRLRRDRHRPAPDPVPERR---- 153
+ PP S RP A + N +S L PS + L ++ RP P P P RR
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGK 324
Query: 152 ---GNRSGHTSL 126
GN S ++SL
Sbjct: 325 PPIGNGSSNSSL 336
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 26.6 bits (56), Expect = 1.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 426 LVPTHQFHESLFEISHGVHILIA 358
+V H F E F++S G HI++A
Sbjct: 359 VVGGHAFEEQSFQMSQGAHIVVA 381
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 2.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 211 VPRLGRIKTRLPTLCEVIFDVLIAGGLLLPGGSV 312
+P L ++KTR PT+ + V I+ G ++P +V
Sbjct: 523 LPVLEKVKTREPTVVMGMVTVYISAGAIIPEETV 556
>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1220
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 214 PRLGRIKTRLPTLCEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSGNEDMDTM 381
P G + T + + EV L + +PG +D E+ T I+SG+ + T+
Sbjct: 755 PAAGTVTTTVYSGSEVYTTTLASASESVPGTVEVVDPEAGSVTTTIYSGSVEYTTV 810
Score = 26.2 bits (55), Expect = 2.5
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 214 PRLGRIKTRLPTLCEVIFDVLIAGGLLLPGGSVSMDGESPKTNTCIFSGNEDMDTM 381
P G + T + + EV L + +PG +D E+ T I+SG+ + T+
Sbjct: 827 PAAGTVTTTVYSGSEVYTTTLASASESVPGTVEVVDPEAGSVTTTIYSGSVEYTTV 882
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 368 SSLPEKMQVLVLGDSPSIDTEPPGSSRPPAMSTS 267
SSL + M V DSP ++ E G S P M ++
Sbjct: 475 SSLDDLMSVTCFRDSPELNHESSGYSSAPLMPSN 508
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 315 RHRTARQQQAASNEYIEYDFA 253
R RT +Q + +YIEYDF+
Sbjct: 43 RKRTFDEQSEITKDYIEYDFS 63
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 302 PGSSRPPAMSTSNMTSHSVGSRVLIRPS 219
P SSR S N +S S+G+ VL RP+
Sbjct: 468 PESSRFGTPSDPNSSSQSLGNEVLSRPN 495
>SPAC9E9.06c |||threonine synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 514
Score = 25.4 bits (53), Expect = 4.4
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 310 VSMDGESPKTNTCIFSGNEDMDTMR 384
+ DG + TCIFSG ++D ++
Sbjct: 478 IEFDGLLDEERTCIFSGKPNIDILK 502
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 5.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 62 SQKVEKPVLSGQRIKTRKRDE 124
+Q++++PV G IK K+DE
Sbjct: 496 AQEMDEPVTQGSNIKQEKQDE 516
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -3
Query: 374 SISSLPEKMQVLVLGDSPSIDTEP-PGSSRPPAMSTSNMTSHS 249
++ +P K+ L +P +T P S PPA N+TS S
Sbjct: 193 AVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSES 235
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 63 VRR*KNQYYRVNGSRPEKEMRKRSMTRTVSATLWYRVWSG 182
V+R K + +RPE EM + + LWY WSG
Sbjct: 43 VKRKKQPARKQIETRPEYEMEPEQPGQVYN--LWYNKWSG 80
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 25.0 bits (52), Expect = 5.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -3
Query: 377 VSISSLPEKMQVLVLGDSPSIDTEPPGSSRPPAMSTSN 264
V S+L + +VL L P P G PA++TSN
Sbjct: 82 VKPSALEKSQEVLSLQKLPIKGRRPAGRRGRPALNTSN 119
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2
Query: 405 HESLFEISHGVHILIAGEDA 346
H LF++SH V + GE+A
Sbjct: 65 HSGLFDVSHMVQWFVRGENA 84
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 24.6 bits (51), Expect = 7.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 93 VNGSRPEKEMRKRSMTRTVS 152
+N S+ EK++RKR+ R +S
Sbjct: 754 LNASKGEKDLRKRTQERLIS 773
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 238 RLPTLCEVIFDVLIAGGLLLPGGS 309
RLP +C++ V++ GGL G S
Sbjct: 378 RLPAVCDLDDSVIVQGGLSTAGRS 401
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 7.6
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -3
Query: 341 LVLGDSPSIDTEPPGSSRPPAMSTSNMTSHSVGSR 237
+V GD+ S+ E PG+++ A ++++ SR
Sbjct: 1115 VVYGDTDSLFVELPGATKEQAFDIGQQLANNITSR 1149
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 24.6 bits (51), Expect = 7.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +1
Query: 295 LPGGSVSMDGESPKTNTCIFSGNEDMDTMRNFEQGFVKL 411
L G S+ D +S +T+ +F G ++ D EQG ++L
Sbjct: 254 LRGTSIDRDDQSVQTD--MFDGMDEDDLAGQIEQGMLEL 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,409
Number of Sequences: 5004
Number of extensions: 41918
Number of successful extensions: 169
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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