Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0876
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   0.76 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.3  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   9.3  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 118 LPELSSDLVAALTSLDMYDFPHFVLFM 38
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = -3

Query: 298 VRKVQSGQSPWCRAPVDEDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 149
           V  +Q+ + PW   P+++     +  +    + Y   L++Q+ +P++  G
Sbjct: 83  VENLQANEKPWSTLPIED-----LTKSDNEDITYPTVLEVQLNLPILKDG 127


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = -3

Query: 298 VRKVQSGQSPWCRAPVDEDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 149
           V  +Q+ + PW   P+++     +  +    + Y   L++Q+ +P++  G
Sbjct: 121 VENLQANEKPWSTLPIED-----LTKSDNEDITYPTVLEVQLNLPILKDG 165


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 167 DSDLQLERINVYYNEASGGKYVPRAILVDWSP 262
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 445 GIPTDTLARRRHR 483
           GIP+ TL +R HR
Sbjct: 438 GIPSTTLWQRAHR 450


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,589
Number of Sequences: 438
Number of extensions: 2277
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)