Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0875
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein |Sch...    83   4e-17
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.1  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   8.4  

>SPAC29E6.08 |tbp1|tdf1, tbp, SPAC30.12|TATA-binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 83.0 bits (196), Expect = 4e-17
 Identities = 38/43 (88%), Positives = 41/43 (95%)
 Frame = +3

Query: 603 GILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           GI+P LQNIV+TVNLDC+LDLK IALHARNAEYNPKRFAAVIM
Sbjct: 53  GIVPTLQNIVATVNLDCRLDLKTIALHARNAEYNPKRFAAVIM 95


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -2

Query: 271 MVYLFQYVIRTW--QHMIHFSFFTFFIWKLRVSVLVSVDLTVYLLI 140
           + Y+F  + R W  +++  FS+   + + L +S L    LT +LLI
Sbjct: 326 LFYVFNRLFRIWWLKYLGPFSYLILYYFFLDISKLQMTSLTFFLLI 371


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +3

Query: 441 TNSQLCN-SATDDAASNSTKYD 503
           T SQL + SA +D+ SNST+YD
Sbjct: 334 TRSQLNDLSAENDSTSNSTEYD 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,170
Number of Sequences: 5004
Number of extensions: 50522
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)