Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0875
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding pr...    82   3e-16
L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box bindin...    82   3e-16
AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription...    82   3e-16
Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    31   0.84 
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    31   0.84 
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    31   0.84 
U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U10401-8|AAA19055.1|  340|Caenorhabditis elegans Tata-binding
           protein protein 1 protein.
          Length = 340

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/56 (75%), Positives = 44/56 (78%)
 Frame = +3

Query: 564 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIM 205


>L07754-1|AAA03582.1|  340|Caenorhabditis elegans TATA-box binding
           protein protein.
          Length = 340

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/56 (75%), Positives = 44/56 (78%)
 Frame = +3

Query: 564 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIM 205


>AF303249-1|AAG50207.1|  340|Caenorhabditis elegans transcription
           factor TFIID protein.
          Length = 340

 Score = 82.2 bits (194), Expect = 3e-16
 Identities = 42/56 (75%), Positives = 44/56 (78%)
 Frame = +3

Query: 564 APMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKRFAAVIM 731
           A M P TP S     +P LQNIVSTVNL  +LDLKKIALHARNAEYNPKRFAAVIM
Sbjct: 150 ATMVPATPASQLDIPMPALQNIVSTVNLGVQLDLKKIALHARNAEYNPKRFAAVIM 205


>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 585 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 713
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 585 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 713
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 585 PLSADPGILPQLQNIVSTVNLDCKLDLKKIALHARNAEYNPKR 713
           P+  D  I  Q++N+V    L   +DL+K+A++  N  Y  ++
Sbjct: 256 PMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHNVTYEREK 298


>U67952-1|AAB07577.2|  414|Caenorhabditis elegans Hypothetical
           protein F39B3.2 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 515 SCRKSIKSTNAKP---S*SCPNDSSDTTLCRPWNFTTVTKHSLYCKS*LQIRFEED 673
           SCRK IKST         +  N+ S+ +LC P +FTT     +Y  +    R++ +
Sbjct: 343 SCRKCIKSTLIGACIYDMAQWNNDSEVSLCAPSSFTTGNATKVYGSTERSFRYKRN 398


>U40942-8|AAC47073.2|  684|Caenorhabditis elegans Hypothetical
           protein K02E10.7 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 507 SMIAAGNLSSQQMLSQASPAPMTPLTPLSADPGILPQLQNIVSTVNLDCKLDLK 668
           +M+   ++ S Q L+   P   TPL  L   P I P+L N +S V  +C L +K
Sbjct: 183 NMVKISDIESSQFLNWL-PFSQTPLHIL---PFIAPELHNQLSEVTSECDLWVK 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,960,645
Number of Sequences: 27780
Number of extensions: 289397
Number of successful extensions: 939
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)