Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0874
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    71   2e-13
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    32   0.10 
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa...    27   3.8  
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa...    26   6.7  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   8.9  
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    25   8.9  
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo...    25   8.9  

>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 31/66 (46%), Positives = 41/66 (62%)
 Frame = +3

Query: 246 IKNESNKEPFWVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVAT 425
           +K  S +   WVFGYGSL W+P   Y  S+  ++KG+ RRFW  +  HRGT + PG V T
Sbjct: 1   MKTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCFIKGYVRRFWMRSEDHRGTVNSPGLVLT 60

Query: 426 LIEDKE 443
           LI  +E
Sbjct: 61  LIPYEE 66



 Score = 32.3 bits (70), Expect = 0.077
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 595 KDALLYIALPENKHWLGSAPLPDIAKQILECRGPSGSNVEYLLRLADFMREEIP 756
           ++ L+Y+   ++  +  S  L  +AK I   RG SG N  YL  LA  +R   P
Sbjct: 128 ENCLVYVGTSKSPQFQPSDDLTQMAKIISTRRGKSGDNFVYLFELAKCLRHLSP 181


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +3

Query: 384 THRGTEDK--PGRVATLIEDKEGITWGKAFLVAAENSVHC 497
           T++G E+K  P  V   + D E  ++GK F++ ++N VHC
Sbjct: 566 TYKGVENKFCPAGVYEYVND-EASSYGKRFVINSQNCVHC 604


>SPCC1753.03c |rec7||meiotic recombination protein Rec7
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 565 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQIL 681
           P + AT  + +    ++A PEN+ +    P P    QIL
Sbjct: 263 PIIAATPLNSQTQASWVAQPENQAYANLIPSPPTTSQIL 301


>SPCC1259.07 |||transcriptional regulatory protein Rxt3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 447 ITWGKAFLVAAENSVHCLISPKRMQIR 527
           +TW  A     ENS+H L   +R+Q R
Sbjct: 314 VTWKPACASIFENSIHTLTLEERLQAR 340


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -1

Query: 347 YITSQGL-LVFEPWIPAEGTITKYPER--FLVRFVFDSELLVSFLNL 216
           YIT + +  + EP+   E  +T+ P++  FLVRFV+  E + ++  L
Sbjct: 172 YITKKDIDNLLEPYGEVED-VTEIPDQSAFLVRFVYRDEAIAAYTAL 217


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 491 YAVFCGHQKRFTPSYSFLVLY*SGDATRLI 402
           YA +CGH K   P+Y  L    S D+  ++
Sbjct: 381 YAPWCGHCKNLAPTYEKLAEEYSDDSNVVV 410


>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
           Aif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 503 DKAVYAVFCGHQKRFTPSYSFLVLY*SGDATRL 405
           D A   ++CG  ++ T SY+ L+L   G+  +L
Sbjct: 237 DLAEKKIYCGSDEKPTESYTKLILATGGEPNKL 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,401,870
Number of Sequences: 5004
Number of extensions: 78504
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)