Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0874
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0153 - 15776359-15776516,15776742-15776821,15776912-157769... 84 1e-16
04_04_0043 - 22330282-22330410,22330484-22330568,22330602-223307... 54 2e-07
10_08_0854 + 21086253-21086258,21086320-21086480,21087065-210871... 30 1.7
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 30 2.3
12_02_0390 - 18510095-18510148,18510318-18512450,18513018-185136... 29 3.0
08_01_1050 - 10649434-10651917 29 4.0
06_03_0630 + 22926652-22928133 29 4.0
09_02_0473 - 9690050-9690802,9690891-9691423,9692202-9692776,969... 29 5.3
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745... 29 5.3
03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516... 29 5.3
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 28 7.0
01_06_0311 - 28377414-28377623,28377758-28377856,28378116-283782... 28 9.3
>02_03_0153 -
15776359-15776516,15776742-15776821,15776912-15776983,
15777070-15777110,15777201-15777257,15777344-15777400,
15778441-15778517,15778652-15778760
Length = 216
Score = 83.8 bits (198), Expect = 1e-16
Identities = 34/66 (51%), Positives = 43/66 (65%)
Frame = +3
Query: 276 WVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVATLIEDKEGITW 455
WVFGYGSL WNPGF++ + + G+VKG+ R F HRGT + P R TL D+E I W
Sbjct: 4 WVFGYGSLIWNPGFDFDEKILGFVKGYKRTFNLACIDHRGTPEHPARTCTLESDEEAICW 63
Query: 456 GKAFLV 473
G A+ V
Sbjct: 64 GIAYCV 69
Score = 44.8 bits (101), Expect = 8e-05
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Frame = +1
Query: 604 LLYIALPE---NKHWLGSAPLPDIAKQILECRGPSGSNVEYLLRL 729
L++++ P+ NK++LG APL D+A+QI GP+G+N +YL +
Sbjct: 113 LVFVSTPDPVGNKYYLGPAPLEDMARQIATANGPNGNNRDYLFSM 157
>04_04_0043 -
22330282-22330410,22330484-22330568,22330602-22330724,
22330839-22330879,22331081-22331137,22331530-22331583,
22331646-22331650,22332392-22332500
Length = 200
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/34 (58%), Positives = 25/34 (73%)
Frame = +3
Query: 276 WVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQG 377
WVFGYGSL WNPGF + L G+V+ + R F+QG
Sbjct: 4 WVFGYGSLVWNPGFAHDARLVGFVRDYRRVFYQG 37
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 20/71 (28%)
Frame = +1
Query: 595 KDALLYIALPE---NKHWLGSAPLPDIAK-----------------QILECRGPSGSNVE 714
K+ ++Y+A N+++LG APL ++AK QI GPSG N E
Sbjct: 85 KNVMVYLATTNKQSNQNYLGPAPLEEMAKYSTYLTCSIGILQLNLRQIYLAEGPSGPNKE 144
Query: 715 YLLRLADFMRE 747
YL +L D + +
Sbjct: 145 YLFKLEDALNK 155
>10_08_0854 +
21086253-21086258,21086320-21086480,21087065-21087175,
21087275-21087329,21087796-21087963,21088232-21090082,
21090355-21090690
Length = 895
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 752 ISSLMKSASLRRYSTFEPDGPRHSSICFAISGKGADPSQCLFSG 621
+ +MKS SLR S E + +HSS+ + GKG + L SG
Sbjct: 446 LDPIMKSKSLRNPSLMEKEDAKHSSL--LVEGKGRVLRKSLLSG 487
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +1
Query: 157 EFKCYYFNYKSCLCLYTKMDKLRNETSSSESKTNLTRNLSGYLVMVPSAGIQGS-NTSNP 333
EF +F +C+ K + ++S SES + GYL + SAG + + + NP
Sbjct: 2182 EFPLDFFEKTTCITCDVKFNSDTTKSSDSESIKQRLSSDDGYLESLTSAGFKVTISNPNP 2241
Query: 334 *LVM 345
+VM
Sbjct: 2242 DIVM 2245
>12_02_0390 -
18510095-18510148,18510318-18512450,18513018-18513681,
18514089-18514202,18514835-18514979,18515274-18515331
Length = 1055
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Frame = +1
Query: 46 NLKARDMNINEKKFFSMYAR*NHLTR-LFIILLSHFLFEFKCYYFN 180
NLKA + IN K+F+M + + R L +I+L+ +L E+K + F+
Sbjct: 762 NLKALGITINMIKYFNMICKTDLPVRSLCVIILTKYLDEWKGFAFS 807
>08_01_1050 - 10649434-10651917
Length = 827
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = -3
Query: 369 RISLRNLLHNQSRIAGIRTLD-SSRGNHNQIPRKV 268
++S+ NLL + I+G+ ++ SS G H QIPR++
Sbjct: 283 QLSVANLLVSMGEISGLEFVNLSSTGLHGQIPREL 317
>06_03_0630 + 22926652-22928133
Length = 493
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 565 PFLPATRADKKDALLYIALPENKHWLGSAPLPDIAKQILECR 690
P +P R+D+ + + I PE+KH+L A L D+ + + E +
Sbjct: 185 PGMPFLRSDELPSAVSIVSPEHKHYLLLAMLRDLFEDLDELK 226
>09_02_0473 -
9690050-9690802,9690891-9691423,9692202-9692776,
9693476-9693507
Length = 630
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +1
Query: 178 NYKSCLCLYTKMDKLRNETSSSESKTNL-TRNLSGYLVMV 294
NY+ C L + MDK R +SE+KT L +GY MV
Sbjct: 52 NYRKCATLLSGMDKTRLFARNSENKTALECAANAGYTNMV 91
>08_02_0678 - 19971416-19971930,19971970-19973347,19974122-19974518,
19974533-19974645,19977436-19977903,19977935-19978059,
19978192-19978452,19984254-19984647
Length = 1216
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 225 KRNEQFRIKNESNKEPFWVFGYGSLCWNPGFEYQQSLTGYVK 350
K+ ++ ++ S +P W + S CWN G + + S Y+K
Sbjct: 1017 KQQKRHYEEDNSGFDPHWGCVFFSFCWNEGGDTRGSSRPYIK 1058
>03_02_0034 -
5166987-5167010,5167596-5167659,5168071-5168174,
5168685-5168829,5168914-5169055,5169432-5169751,
5169895-5170196,5170603-5170647,5171218-5171268,
5171374-5171460,5171587-5171764,5172453-5172528,
5173018-5173234,5173604-5173909
Length = 686
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 495 SVRCFLRPPKTLYPKLFLP-CPLLEWRRDPAYLLFHDE 385
S RC PP + P+L C + +P Y+ FHDE
Sbjct: 500 SARCRSPPPSPVSPELGKTRCSWITVNSEPLYVAFHDE 537
>07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 595 KDALLYIALPENKHWLGSAPLPDIAKQILEC 687
K++ + +++PE + +G APL D Q+L C
Sbjct: 961 KESHVVLSIPEYNYAIGFAPLMDYNSQLLPC 991
>01_06_0311 -
28377414-28377623,28377758-28377856,28378116-28378253,
28378697-28378827,28378920-28379066,28379164-28379293,
28379625-28379654,28380138-28380416
Length = 387
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -1
Query: 356 ETFYITSQGLLVF-EPWIPAEGTITK 282
E F S+G+ +F + W+P EGT TK
Sbjct: 103 ENFETNSKGVEIFWKSWLPREGTATK 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,099,571
Number of Sequences: 37544
Number of extensions: 487199
Number of successful extensions: 1277
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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