Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0874
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical ...    91   1e-18
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    32   0.38 
AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical ...    32   0.51 
AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical ...    29   3.6  
AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.    29   3.6  
AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.    29   3.6  
Z78062-7|CAD56571.2|  270|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z78062-6|CAN99661.1|  274|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL021571-9|CAA16511.3|  270|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL021571-8|CAN99720.1|  274|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical pr...    28   8.3  
AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.      28   8.3  
AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP ...    28   8.3  

>AF067937-8|AAF99914.2|  232|Caenorhabditis elegans Hypothetical
           protein F22F7.7 protein.
          Length = 232

 Score = 90.6 bits (215), Expect = 1e-18
 Identities = 39/82 (47%), Positives = 51/82 (62%)
 Frame = +3

Query: 246 IKNESNKEPFWVFGYGSLCWNPGFEYQQSLTGYVKGFSRRFWQGNTTHRGTEDKPGRVAT 425
           +   S  +  W+FGYGSL WNPGF +  S   Y  G++RR +QGNT HRG E  PGRVAT
Sbjct: 41  LATSSTSQSLWIFGYGSLIWNPGFTFSTSRKAYAIGWARRMYQGNTYHRGDEKLPGRVAT 100

Query: 426 LIEDKEGITWGKAFLVAAENSV 491
           LIE+    T G  F V  ++++
Sbjct: 101 LIEETNSYTNGVVFRVDGKSAI 122



 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/52 (36%), Positives = 33/52 (63%)
 Frame = +1

Query: 601 ALLYIALPENKHWLGSAPLPDIAKQILECRGPSGSNVEYLLRLADFMREEIP 756
           AL  +A  +N+ +LG   L  +A++I+  +G +G N EY+L LA+ +R+  P
Sbjct: 160 ALTCVADQQNELYLGPDDLIKMAREIVTAKGCAGPNCEYVLNLAENLRKLFP 211


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
 Frame = -3

Query: 717 ILNV*ARWTTAFQYLFR---YIWQRRRSKPM--FILWKGYVQQGILFIC 586
           +L+V   W+  F  +F    + W   R+KP+  F  +  YV QGI+F C
Sbjct: 135 MLSVCYLWSPEFPIIFHPEFWGWTEERNKPLVNFFFYLNYVVQGIVFFC 183


>AF125951-3|AAY86273.1|  244|Caenorhabditis elegans Hypothetical
           protein D2063.4 protein.
          Length = 244

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = +1

Query: 127 FIILLSHFLFEFKCYYFNYKSCL---CLYTKMDKLRNETSSSE--SKTNL-TRNLSGYLV 288
           F +LLSHF F F  +   YK+ L   C ++ +D  RN  S S+   ++NL  + LS  L 
Sbjct: 22  FHMLLSHFKFNFSHFPDFYKTLLLAVCCFSAVDGFRNVCSGSDLSVRSNLDVKQLSELLK 81

Query: 289 MVPSAGIQG 315
             P   + G
Sbjct: 82  EDPCTHVAG 90


>AL008869-2|CAC42315.1|  810|Caenorhabditis elegans Hypothetical
           protein H30A04.1b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 NEQFRIKNESNKEPFWVFGYGSLCWNPGFEYQQSLTG 341
           ++ F   N S     W+    SL W  G+++ +S++G
Sbjct: 25  DDVFHFTNPSQGNAVWILDESSLPWTGGYQFLRSISG 61


>AL008869-1|CAA15516.1|  808|Caenorhabditis elegans Hypothetical
           protein H30A04.1a protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 NEQFRIKNESNKEPFWVFGYGSLCWNPGFEYQQSLTG 341
           ++ F   N S     W+    SL W  G+++ +S++G
Sbjct: 25  DDVFHFTNPSQGNAVWILDESSLPWTGGYQFLRSISG 61


>AB032749-1|BAA92158.1|  810|Caenorhabditis elegans EAT-20B protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 NEQFRIKNESNKEPFWVFGYGSLCWNPGFEYQQSLTG 341
           ++ F   N S     W+    SL W  G+++ +S++G
Sbjct: 25  DDVFHFTNPSQGNAVWILDESSLPWTGGYQFLRSISG 61


>AB032748-1|BAA92157.1|  808|Caenorhabditis elegans EAT-20A protein.
          Length = 808

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 231 NEQFRIKNESNKEPFWVFGYGSLCWNPGFEYQQSLTG 341
           ++ F   N S     W+    SL W  G+++ +S++G
Sbjct: 25  DDVFHFTNPSQGNAVWILDESSLPWTGGYQFLRSISG 61


>Z78062-7|CAD56571.2|  270|Caenorhabditis elegans Hypothetical
           protein T19A6.1a protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 83  NFFQCMPVEII*LVFLSFCFHTFYSNLSVTISIIKAVCVCIQKWIS*ETKR---AVPNQK 253
           + F C+ + +  ++ + F F  ++ N  +  SI+  +C+ +   ++    R     P +K
Sbjct: 58  SLFVCLALCVANILRILFWFGKWFDNALLAQSIVMLICMILMLELAVRMNRKHTPKPLRK 117

Query: 254 RI*QGTFL-GIWLWFPL 301
            I +G F+   W W  L
Sbjct: 118 SILKGDFIRSFWAWHDL 134


>Z78062-6|CAN99661.1|  274|Caenorhabditis elegans Hypothetical
           protein T19A6.1c protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 83  NFFQCMPVEII*LVFLSFCFHTFYSNLSVTISIIKAVCVCIQKWIS*ETKR---AVPNQK 253
           + F C+ + +  ++ + F F  ++ N  +  SI+  +C+ +   ++    R     P +K
Sbjct: 62  SLFVCLALCVANILRILFWFGKWFDNALLAQSIVMLICMILMLELAVRMNRKHTPKPLRK 121

Query: 254 RI*QGTFL-GIWLWFPL 301
            I +G F+   W W  L
Sbjct: 122 SILKGDFIRSFWAWHDL 138


>AL021571-9|CAA16511.3|  270|Caenorhabditis elegans Hypothetical
           protein T19A6.1a protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 83  NFFQCMPVEII*LVFLSFCFHTFYSNLSVTISIIKAVCVCIQKWIS*ETKR---AVPNQK 253
           + F C+ + +  ++ + F F  ++ N  +  SI+  +C+ +   ++    R     P +K
Sbjct: 58  SLFVCLALCVANILRILFWFGKWFDNALLAQSIVMLICMILMLELAVRMNRKHTPKPLRK 117

Query: 254 RI*QGTFL-GIWLWFPL 301
            I +G F+   W W  L
Sbjct: 118 SILKGDFIRSFWAWHDL 134


>AL021571-8|CAN99720.1|  274|Caenorhabditis elegans Hypothetical
           protein T19A6.1c protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = +2

Query: 83  NFFQCMPVEII*LVFLSFCFHTFYSNLSVTISIIKAVCVCIQKWIS*ETKR---AVPNQK 253
           + F C+ + +  ++ + F F  ++ N  +  SI+  +C+ +   ++    R     P +K
Sbjct: 62  SLFVCLALCVANILRILFWFGKWFDNALLAQSIVMLICMILMLELAVRMNRKHTPKPLRK 121

Query: 254 RI*QGTFL-GIWLWFPL 301
            I +G F+   W W  L
Sbjct: 122 SILKGDFIRSFWAWHDL 138


>Z82052-6|CAB04829.4|  327|Caenorhabditis elegans Hypothetical
           protein T25E12.11 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 86  FFQCMPVEII*LVFLSFCFHTFYSNLSVTISIIK 187
           FFQ   V +  L+ L FCF T  S++   I ++K
Sbjct: 233 FFQSFLVVLFKLIILPFCFETGNSSIEFFIMMLK 266


>Z68333-3|CAA92726.2| 1694|Caenorhabditis elegans Hypothetical
           protein C05C12.3 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRTLPYLTKENA 520
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  ++      NA
Sbjct: 621 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQISLINNA 677


>Z68320-2|CAA92706.1|  502|Caenorhabditis elegans Hypothetical
           protein W07A12.7 protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 660 WQRRRSKPMFILWKGYVQQGILFICPS 580
           W R+  +P F  WK ++ + +L + PS
Sbjct: 165 WLRKADEPFFQHWKSFIARRLLRLAPS 191


>AY726541-1|AAU25950.1| 1694|Caenorhabditis elegans GTL-1 protein.
          Length = 1694

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRTLPYLTKENA 520
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  ++      NA
Sbjct: 621 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQISLINNA 677


>AJ276019-1|CAC81667.1| 1681|Caenorhabditis elegans putative TRP
           homologous cationchannel protein.
          Length = 1681

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +2

Query: 353 FLKEILAREHHSSWNRR*AGSRRHSNRGQGRNN-LG*SVFGGRRKQRTLPYLTKENA 520
           + KE    ++    NR+  G R HSN   GRN+ +G S   GR +  ++      NA
Sbjct: 608 YTKEEFKNQYFLFNNRKQFGKRVHSNSNGGRNDVIGPSGDAGRERMSSMQISLINNA 664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,522,702
Number of Sequences: 27780
Number of extensions: 431122
Number of successful extensions: 1086
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)