Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0873
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    27   2.1  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    27   3.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    26   6.3  

>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -3

Query: 483 SSEGLPEVVKRSPHQMLADHF 421
           S++  P +V++SP+QMLA+ F
Sbjct: 114 SAQATPSIVEQSPNQMLANFF 134


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 320 CHYPFCRRPCWRRQRS 367
           C +P+C  PCW+  +S
Sbjct: 19  CSFPYCSLPCWKIHQS 34


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +2

Query: 38  DIWVITFPRSGTT-WTQELIWLVENNLNYNAARERPLY-ERFPMLETTSQIPEIAYEFIK 211
           D++  TFP +GTT  T E++      +   A     LY   FP   TTS   E+      
Sbjct: 209 DLYTSTFPANGTTSGTVEVVIPTAGTVTETAVSGSELYTSTFPANGTTSGTVEVVIPTAG 268

Query: 212 ANFMN--LGS--FQGLTEGPGTLAG 274
              +    GS  F   T+  GT++G
Sbjct: 269 TRTVTKISGSKFFTTTTDASGTVSG 293


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 651 SLGRPCSTSARTYRLDGFPWA 589
           +L  PCS   RTY +DG  +A
Sbjct: 245 TLSDPCSLRGRTYDIDGIEFA 265


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,092,126
Number of Sequences: 5004
Number of extensions: 66268
Number of successful extensions: 179
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)