Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0873
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical ...    35   0.051
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved ger...    30   1.9  
Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA he...    29   4.4  
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    28   7.8  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    28   7.8  

>AL132858-6|CAB60475.1|  412|Caenorhabditis elegans Hypothetical
           protein Y113G7A.11 protein.
          Length = 412

 Score = 35.1 bits (77), Expect = 0.051
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +2

Query: 17  NMKVRPDDIWVITFPRSGTTWTQELIWLVENNLNYNAARERPLYERFPMLE 169
           +M+    D+ + T+P+ GTTW Q +   +    +Y A +   L  + PM+E
Sbjct: 81  SMQFGETDVVIATYPKCGTTWLQHITSQLIKGHDYKAGKGNELCVQSPMIE 131



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 283 EEMPSPRFIKTHXXXXXXXXXXXETAKVVYVARDPRDVVVSYYY 414
           + +  PR +KTH              K +Y  R+P+D + SY++
Sbjct: 139 DNIKGPRVLKTHFHHYNIPKYPD--TKYIYCVRNPKDCLTSYFH 180


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 321 ATIPSAADPAGDGKGRVRGQGSKGCCG 401
           +T  +A D  G+   RV+ QG  GCCG
Sbjct: 41  STASTAIDTLGNSSSRVKRQGGCGCCG 67


>AC006605-1|AAK85443.1|  430|Caenorhabditis elegans Conserved
           germline helicase protein1 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +1

Query: 355 TAKVVYVARDPRDVVVSYYYLHKMVSKHLMRATFHDFWEAFRRDLL 492
           T +V  +A+   ++  S YY+H  ++++     FHDF +   R+L+
Sbjct: 290 TQRVELLAKKITEIGYSCYYIHSKMAQNHRNRVFHDFRQGNCRNLV 335


>Z54327-6|CAA91120.1|  425|Caenorhabditis elegans Hypothetical
           protein C26D10.2a protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = +3

Query: 588 LPKEIRRVCK-FLQ---RYYTDDQVK----ALSEH-LSFESLRKNKNVNN 710
           LPKE+R VCK F+Q     Y DD+ K     L +H +  +   KN+ + N
Sbjct: 227 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLN 276


>U08102-1|AAB65852.1|  417|Caenorhabditis elegans putative RNA
           helicase protein.
          Length = 417

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
 Frame = +3

Query: 588 LPKEIRRVCK-FLQ---RYYTDDQVK----ALSEH-LSFESLRKNKNVNN 710
           LPKE+R VCK F+Q     Y DD+ K     L +H +  +   KN+ + N
Sbjct: 219 LPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRRLLN 268


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 403 KPQHPLDPWPRTRPLPS 353
           +PQ+P +P+P  RPLP+
Sbjct: 337 RPQNPANPYPTYRPLPT 353


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 403 KPQHPLDPWPRTRPLPS 353
           +PQ+P +P+P  RPLP+
Sbjct: 337 RPQNPANPYPTYRPLPT 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,126,381
Number of Sequences: 27780
Number of extensions: 377223
Number of successful extensions: 1118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)