Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0872
(726 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 24 1.3
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 24 1.7
AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cycl... 23 2.9
AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cycl... 23 2.9
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 22 6.8
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 22 6.8
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 22 6.8
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 21 9.0
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 21 9.0
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 9.0
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 9.0
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 9.0
>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
protein.
Length = 1770
Score = 24.2 bits (50), Expect = 1.3
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +1
Query: 40 VHLSKQKQTQDKMC-DRKAVIKNADMSEEMQQDAVDCATQALEKFNIEKDIAAFIKKEFD 216
+H ++ K+T DK+C + V+ A ++ + +EK + A +KK +
Sbjct: 1689 IHRTQVKETDDKICFTMRPVVSCASGCTAVETKSKPYKFHCMEK----NEAAMKLKKRIE 1744
Query: 217 KKYNP 231
K NP
Sbjct: 1745 KGANP 1749
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 23.8 bits (49), Expect = 1.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 224 TILPGIASWVEFWLVCDTRDSPLHLLL 304
+IL + SWV FWL D SP ++L
Sbjct: 242 SILIVVISWVSFWLHMDA--SPPRIVL 266
>AY769960-1|AAV34676.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 541 FHLHCLFNRKFTMLDINCVLPLHLVPGAC-GVC 636
F H +FNR ++ C + ++P C G C
Sbjct: 215 FPFHLMFNRDLIIVQTGCTI-TRVIPQVCSGNC 246
>AB181489-1|BAD22772.1| 603|Apis mellifera soluble guanylyl cyclase
beta 1 subunit protein.
Length = 603
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +1
Query: 541 FHLHCLFNRKFTMLDINCVLPLHLVPGAC-GVC 636
F H +FNR ++ C + ++P C G C
Sbjct: 215 FPFHLMFNRDLIIVQTGCTI-TRVIPQVCSGNC 246
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 239 IASWVEFWL 265
I SWV FWL
Sbjct: 257 IVSWVSFWL 265
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.8 bits (44), Expect = 6.8
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 239 IASWVEFWL 265
I SWV FWL
Sbjct: 257 IVSWVSFWL 265
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 21.8 bits (44), Expect = 6.8
Identities = 6/17 (35%), Positives = 13/17 (76%)
Frame = -1
Query: 162 ERLSCTVNSILLHLFAH 112
ER+ C+ NS++ H++ +
Sbjct: 42 ERVYCSRNSLMTHIYTY 58
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 21.4 bits (43), Expect = 9.0
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 224 TILPGIASWVEFWL 265
T L I SWV FW+
Sbjct: 255 TCLIVIMSWVSFWI 268
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 227 ILPGIASWVEFWL 265
+L + SWV FWL
Sbjct: 225 VLLVVLSWVSFWL 237
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 239 IASWVEFWL 265
I SWV FWL
Sbjct: 236 IISWVSFWL 244
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 239 IASWVEFWL 265
I SWV FWL
Sbjct: 236 IISWVSFWL 244
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.4 bits (43), Expect = 9.0
Identities = 7/9 (77%), Positives = 7/9 (77%)
Frame = +2
Query: 239 IASWVEFWL 265
I SWV FWL
Sbjct: 175 IISWVSFWL 183
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,446
Number of Sequences: 438
Number of extensions: 3784
Number of successful extensions: 17
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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