Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    27   0.17 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   6.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   8.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   8.2  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 27.1 bits (57), Expect = 0.17
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 252 RLYTVTRLT*ILTMYSERAYGRES 181
           +LYT+  +  I+ +Y+  +YGRE+
Sbjct: 26  KLYTIVHIFIIIALYAHSSYGREN 49


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 385 YGLVTNIEFRILIFLYHKQFSVLNNNYI*T 296
           Y +V  +   ++IF+   Q S   NNY+ T
Sbjct: 368 YSIVGAVTTYLVIFIQFDQSSNSRNNYVLT 397


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 216 TMYSERAYGRESDVPVGLLHTPPLVLEDALA 124
           T  S R+   +SDV +  +H P L+  + LA
Sbjct: 225 TKSSPRSSPVQSDVSLSPVHEPLLITTEKLA 255


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 262 RFRFECE*RAPAS 300
           RFR+ECE R+  S
Sbjct: 77  RFRYECEGRSAGS 89


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,434
Number of Sequences: 336
Number of extensions: 3796
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20650031
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)