Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    29   0.73 
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.2  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    26   5.2  

>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 219 LTMYSERAYGRESDVPVGLLHTPPLVLEDALAPGLA 112
           LT YSE+   +ES+  VGLL+ P   +E+ +   LA
Sbjct: 830 LTQYSEKFLNKESENTVGLLNAPGENIEELVDNQLA 865


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 379 LVTNIEFRILIFLYHKQFSVLNNN 308
           L+T ++++IL+  YHK  S   NN
Sbjct: 352 LITWLKYKILLIYYHKSSSTYKNN 375


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 234 RLT*ILTMYSERAYGRESDVPVGLLHTPPLVLEDALAPG 118
           R T  +  Y  + Y R SDV V L H  P   +  + PG
Sbjct: 361 RRTGFVDKYRPQLYSRTSDVTVELTHPDPNDSDKMVMPG 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,926
Number of Sequences: 5004
Number of extensions: 62251
Number of successful extensions: 132
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)