Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0871
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0770 - 23007202-23007333,23007475-23007555,23007642-230077...    33   0.33 
12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    30   1.8  
02_05_0123 + 26027669-26027827,26027941-26027952                       30   1.8  
03_05_0408 - 23949136-23949200,23949579-23949768,23950157-23950201     30   2.3  
06_01_0320 - 2320317-2320336,2320791-2320902,2321092-2321236,232...    29   5.4  
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471           28   7.1  
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019...    28   9.4  
02_02_0550 - 11413912-11414079,11414338-11414513,11414617-114146...    28   9.4  

>12_02_0770 -
           23007202-23007333,23007475-23007555,23007642-23007742,
           23007855-23008455,23008742-23009365,23010294-23010377
          Length = 540

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 60  AGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPVRHSRGRMPAR 206
           A G     P+P P+ +  +++ERG   G EG  + N   R  R    AR
Sbjct: 11  ASGFASPCPLPAPTHHAKVMRERGEMEGREGSRLDNSLTRKRRSSSTAR 59


>12_01_0503 -
           3981603-3981730,3982858-3983023,3983057-3983139,
           3983250-3983301,3983497-3983654,3983756-3985617,
           3986029-3986093,3986176-3986340,3986836-3986893,
           3987479-3987590,3987661-3987712,3988080-3988140,
           3988220-3988377,3988705-3988787,3988897-3988945,
           3989122-3989185,3990225-3990317,3990410-3990543,
           3991364-3991585,3991815-3991937,3992103-3992267,
           3993064-3993450
          Length = 1479

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 33  AEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRP 137
           A A   +P        AP P+PS+ +ML+Q   +P
Sbjct: 843 AAAAAAAPTTAAAAAAAPAPRPSARDMLMQRPAKP 877


>02_05_0123 + 26027669-26027827,26027941-26027952
          Length = 56

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 27  RHAEAPRLSP-AAGGMVGLAPVPQPSSNEMLVQERG 131
           R AEA RLS  AA G+  +A  P PS +++   ERG
Sbjct: 16  RRAEAARLSATAATGVEAVAAAPDPSLSDLAEGERG 51


>03_05_0408 -
          23949136-23949200,23949579-23949768,23950157-23950201
          Length = 99

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +3

Query: 36 EAPRLSPAAGGMVGLAPVPQP 98
          E P LSP+AG  VG+A V QP
Sbjct: 31 EQPNLSPSAGNGVGIAKVKQP 51


>06_01_0320 -
           2320317-2320336,2320791-2320902,2321092-2321236,
           2321353-2321459,2321572-2321665,2321752-2321948,
           2322311-2322382,2322504-2322618,2323060-2323176,
           2323253-2323344,2323445-2323621,2323746-2323820,
           2323911-2324051,2324671-2324859,2325298-2325363,
           2325445-2325595,2325718-2325786,2326293-2326441,
           2326526-2326657,2326756-2327081,2327167-2327203,
           2327926-2327980,2328242-2328309,2328464-2328466
          Length = 902

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 437 HKQMIIIVRGRSQGYLKLWVSHQYRISN 354
           H ++ II+ G   G +++W S  YR+ N
Sbjct: 233 HPELPIIITGSEDGTVRIWHSTTYRLEN 260


>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
          Length = 331

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +3

Query: 15  HMTTRHAEAPRLSPAAGGMVGLAPVPQPSSNEMLVQERGRPPGLEGEYVANRPVRHSRGR 194
           H  T   E P     +GG+V  +P     +NE +V ++  PP   G  V +   + S   
Sbjct: 217 HDQTNKPELPSSVAESGGIV--SPKSPEKTNEQIVNKKNEPPVAPGTTVQDDTHKSSNQY 274

Query: 195 MPARY 209
             AR+
Sbjct: 275 WNARF 279


>06_02_0173 -
           12601025-12601071,12601632-12601698,12601857-12601934,
           12602235-12602396,12603309-12603440,12604604-12604656,
           12605808-12606372
          Length = 367

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 57  AAGGMVGLAPVPQ---PSSNEMLV-QERGRPPGLEGEYVANRPVRHSRGRMP 200
           A GG     P P+   P+S  +L  ++RGRPPG  G     RP +H +   P
Sbjct: 139 AYGGAAASQPAPRQAPPASGRVLPHKKRGRPPG-SGNKQQQRP-QHKKAAAP 188


>02_02_0550 -
           11413912-11414079,11414338-11414513,11414617-11414629,
           11414844-11414871,11415447-11415784
          Length = 240

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 422 IIVRGRSQGYLKLWVSHQYRISNFNLPL 339
           +I++G S GY K+W  H+YR  N N+ +
Sbjct: 123 VILQGLSMGYKKVW-WHKYRNLNKNIDI 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,111,939
Number of Sequences: 37544
Number of extensions: 385184
Number of successful extensions: 971
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)